ModCRE DB

Transcription factor

P39880 - CUX1

Homeobox protein cut-like 1 (CCAAT displacement protein) (CDP) (CDP/Cux p200) (Homeobox protein cux-1) [Cleaved into: CDP/Cux p110]

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 1505 aa

17 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known17
MotifPredictionSourceDNA bindingSupportLogoActions
MA0754.1 Known JASPAR TAATCGATAA Direct PWM Open · Scan
MA0754.2 Known JASPAR TAATCGATAA Direct PWM Open · Scan
MA0754.3 Known JASPAR TAATCGATA Direct PWM Open · Scan
M01501_2.00 Known CisBP TTATTGGTT Direct PWM Open · Scan
M01502_2.00 Known CisBP TTATCGGTT Direct PWM Open · Scan
M02946_2.00 Known CisBP ATCGATAACTGATCGAT Direct PWM Open · Scan
M02947_2.00 Known CisBP ATCGATAACCTGATCGAT Direct PWM Open · Scan
M02948_2.00 Known CisBP TAATCGATAA Direct PWM Open · Scan
M04679_2.00 Known CisBP TGATCGATAC Direct PWM Open · Scan
M04680_2.00 Known CisBP GTATTGATCA Direct PWM Open · Scan
M09023_2.00 Known CisBP AGGGGGATCGATGG Direct PWM Open · Scan
M10422_2.00 Known CisBP CCAATAATCGAT Direct PWM Open · Scan
M10423_2.00 Known CisBP TATATCGATTATTTT Direct PWM Open · Scan
M10424_2.00 Known CisBP GCGATCGATT Direct PWM Open · Scan
M10425_2.00 Known CisBP CCATACATATTGGTG Direct PWM Open · Scan
M10426_2.00 Known CisBP GGGATCGATC Direct PWM Open · Scan
CUX1_HUMAN.H11MO.0.C Known HOCOMOCO AGGGGGATCGATGG Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 1505 aa
1245-1300

Region 1245-1300 0 PWM

Residues
56 aa
Domains
PF00046 · Homeodomain
3D models
1 active PDB
Templates
2HDD
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 1245-13001 model
Actions
Predicted = Low DIMER_P39880:1245:1300_2hdd_B_1 2hdd 1245-1300 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
8-99PF25398CUX1-like, N-terminal tRNA-binding armNo overlap with loaded model regions
548-620PF02376CUT domainNo overlap with loaded model regions
940-1009PF02376CUT domainNo overlap with loaded model regions
1123-1198PF02376CUT domainNo overlap with loaded model regions
1245-1301PF00046Homeodomainoverlaps 1245-1300