ModCRE DB

Transcription factor

P40424 - PBX1

Pre-B-cell leukemia transcription factor 1 (Homeobox protein PBX1) (Homeobox protein PRL)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 430 aa

12 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known12
MotifPredictionSourceDNA bindingSupportLogoActions
MA0070.1 Known JASPAR CCATCAATCAAA Direct PWM Open · Scan
MA0070.2 Known JASPAR ATCAATCAA Direct PWM Open · Scan
M02685_2.00 Known CisBP TTTGATTGATGG Direct PWM Open · Scan
M05362_2.00 Known CisBP TTGATTGACA Direct PWM Open · Scan
M05363_2.00 Known CisBP GTGATTGACG Direct PWM Open · Scan
M05364_2.00 Known CisBP TTGATTGATG Direct PWM Open · Scan
M05365_2.00 Known CisBP CATCAATCAC Direct PWM Open · Scan
M09164_2.00 Known CisBP TGATTGACAG Direct PWM Open · Scan
M09561_2.00 Known CisBP TGAGTGACAGGC Direct PWM Open · Scan
M10748_2.00 Known CisBP TTGATTGAT Direct PWM Open · Scan
M10749_2.00 Known CisBP AATTTGATTGATGTG Direct PWM Open · Scan
PBX1_HUMAN.H11MO.0.A Known HOCOMOCO TGATTGACAG Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 430 aa
232-305

Region 232-305 0 PWM

Residues
74 aa
Domains
PF03792 · PBC domain PF05920 · Homeobox KN domain
3D models
1 active PDB
Templates
5ZJR
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 232-3051 model
Actions
Predicted = Low DIMER_P40424:232:305_5zjr_B_1 5zjr 232-305 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
42-232PF03792PBC domainoverlaps 232-305
252-290PF05920Homeobox KN domainoverlaps 232-305