ModCRE DB

Transcription factor

P40425 - PBX2

Pre-B-cell leukemia transcription factor 2 (Homeobox protein PBX2) (Protein G17)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 430 aa

6 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known6
MotifPredictionSourceDNA bindingSupportLogoActions
MA1113.1 Known JASPAR GTGATTGACAGG Direct PWM Open · Scan
MA1113.2 Known JASPAR GTCATAAATCATT Direct PWM Open · Scan
MA1113.3 Known JASPAR CATAAATCA Direct PWM Open · Scan
M08134_2.00 Known CisBP GTGATTGACAGG Direct PWM Open · Scan
M09165_2.00 Known CisBP TAAATTGATTGATGG Direct PWM Open · Scan
PBX2_HUMAN.H11MO.0.C Known HOCOMOCO TAAATTGATTGATGG Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 430 aa
243-316

Region 243-316 0 PWM

Residues
74 aa
Domains
PF03792 · PBC domain PF05920 · Homeobox KN domain
3D models
1 active PDB
Templates
5ZJR
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 243-3161 model
Actions
Predicted = Low DIMER_P40425:243:316_5zjr_B_1 5zjr 243-316 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
52-243PF03792PBC domainoverlaps 243-316
263-301PF05920Homeobox KN domainoverlaps 243-316