ModCRE DB

Transcription factor

P41235 - HNF4A

Hepatocyte nuclear factor 4-alpha (HNF-4-alpha) (Nuclear receptor subfamily 2 group A member 1) (Transcription factor 14) (TCF-14) (Transcription factor HNF-4)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 474 aa

27 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known27
MotifPredictionSourceDNA bindingSupportLogoActions
MA0114.1 Known JASPAR AGGCCAAAGGTCA Direct PWM Open · Scan
MA0114.2 Known JASPAR CTGGACTTTGGACTC Direct PWM Open · Scan
MA0114.4 Known JASPAR TCCAAAGTCCAAA Direct PWM Open · Scan
MA0114.5 Known JASPAR CAAAGTCCA Direct PWM Open · Scan
MA1494.1 Known JASPAR GGGTCCAAAGGTCAC Direct PWM Open · Scan
MA1494.2 Known JASPAR GGGTCCAAAGGTCA Direct PWM Open · Scan
M03357_2.00 Known CisBP GATGGACTTTGGACTC Direct PWM Open · Scan
M03358_2.00 Known CisBP GGGGTCAAAGTCCATT Direct PWM Open · Scan
M03359_2.00 Known CisBP ATTGGACTTTGGACCC Direct PWM Open · Scan
M03360_2.00 Known CisBP GGGGTCAAAGGTCA Direct PWM Open · Scan
M03361_2.00 Known CisBP GGGGTCAAAGTCCAAT Direct PWM Open · Scan
M03362_2.00 Known CisBP GGGTCCAAAGGTCAA Direct PWM Open · Scan
M05573_2.00 Known CisBP GGGGTCAAAGGTCAA Direct PWM Open · Scan
M05574_2.00 Known CisBP GGGGTCAAAGTCCAA Direct PWM Open · Scan
M05575_2.00 Known CisBP GGGTCCAAAGGTCAC Direct PWM Open · Scan
M05576_2.00 Known CisBP TTGGACTTTGGACTC Direct PWM Open · Scan
M05577_2.00 Known CisBP GGGGTCAAAGGTCAA Direct PWM Open · Scan
M05578_2.00 Known CisBP GGGGTCAAAGTCCAC Direct PWM Open · Scan
M05579_2.00 Known CisBP GGGTCCAAAGGTCAC Direct PWM Open · Scan
M05580_2.00 Known CisBP GTGGACTTTGGACTC Direct PWM Open · Scan
M08219_2.00 Known CisBP GAGTCCAAAGTCCAG Direct PWM Open · Scan
M08220_2.00 Known CisBP AGTCCA Direct PWM Open · Scan
M09268_2.00 Known CisBP GAGTCCAAAGTCCA Direct PWM Open · Scan
M09605_2.00 Known CisBP CAGAGGTCAAAGTCCA Direct PWM Open · Scan
M11105_2.00 Known CisBP GGGGGCAAAGGTCAC Direct PWM Open · Scan
M11106_2.00 Known CisBP ACAGGGTCAAAGGTCAAGA Direct PWM Open · Scan
HNF4A_HUMAN.H11MO.0.A Known HOCOMOCO GAGTCCAAAGTCCA Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 474 aa
58-135

Region 58-135 0 PWM

Residues
78 aa
Domains
PF00105 · Double treble clef zinc finger, C4 type
3D models
1 active PDB
Templates
3CBB
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 58-1351 model
Actions
Predicted = Low DIMER_P41235:58:135_3cbb_B_1 3cbb 58-135 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
59-127PF00105Double treble clef zinc finger, C4 typeoverlaps 58-135
175-361PF00104Ligand-binding domain of nuclear hormone receptorNo overlap with loaded model regions