ModCRE DB

Transcription factor

P48436 - SOX9

Transcription factor SOX-9

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 509 aa

15 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known15
MotifPredictionSourceDNA bindingSupportLogoActions
MA0077.1 Known JASPAR CCATTGTTC Direct PWM Open · Scan
MA0077.2 Known JASPAR CCATTGTT Direct PWM Open · Scan
M02716_2.00 Known CisBP GAACAATGG Direct PWM Open · Scan
M03501_2.00 Known CisBP GAACAATGG Direct PWM Open · Scan
M03502_2.00 Known CisBP AACAATGTGCAGTGTT Direct PWM Open · Scan
M03503_2.00 Known CisBP ATCAATGTGCAGTGAT Direct PWM Open · Scan
M03504_2.00 Known CisBP ATGAATGTGCAGTCAT Direct PWM Open · Scan
M03505_2.00 Known CisBP AAACAATTGCAGTGTTT Direct PWM Open · Scan
M03506_2.00 Known CisBP AATCAATTTCAGTGATT Direct PWM Open · Scan
M03507_2.00 Known CisBP AATGAATTGCAGTCATT Direct PWM Open · Scan
M05767_2.00 Known CisBP AGAACAATGG Direct PWM Open · Scan
M05768_2.00 Known CisBP AGAACAATAG Direct PWM Open · Scan
M09389_2.00 Known CisBP GAACAAAGGCCCCTTT Direct PWM Open · Scan
M11305_2.00 Known CisBP TAAGAACAATGGGA Direct PWM Open · Scan
SOX9_HUMAN.H11MO.0.B Known HOCOMOCO AAAGGGGCCTTTGTTC Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 509 aa
103-174

Region 103-174 0 PWM

Residues
72 aa
Domains
PF00505 · HMG (high mobility group) box
3D models
1 active PDB
Templates
4EUW
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 103-1741 model
Actions
Predicted = Low TFS_P48436:103:174_4euw_A_1 4euw 103-174 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
23-94PF12444Sox developmental protein N terminalNo overlap with loaded model regions
105-173PF00505HMG (high mobility group) boxoverlaps 103-174