ModCRE DB

Transcription factor

P48443 - RXRG

Retinoic acid receptor RXR-gamma (Nuclear receptor subfamily 2 group B member 3) (Retinoid X receptor gamma)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 463 aa

16 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known16
MotifPredictionSourceDNA bindingSupportLogoActions
MA0856.1 Known JASPAR GGGGTCAAAGGTCA Direct PWM Open · Scan
MA1149.1 Known JASPAR GAGGTCATGTAGAGGTCA Direct PWM Open · Scan
MA1149.2 Known JASPAR AGGTCATGTAGAGGTCA Direct PWM Open · Scan
MA1556.1 Known JASPAR GAGGTCATGACCTC Direct PWM Open · Scan
M02746_2.00 Known CisBP GGTCAAAGGTCA Direct PWM Open · Scan
M03375_2.00 Known CisBP GGGGTCAAAGGTCA Direct PWM Open · Scan
M03376_2.00 Known CisBP GAGGTCATGACCCC Direct PWM Open · Scan
M03377_2.00 Known CisBP GGGGTCAAAGGTCA Direct PWM Open · Scan
M03378_2.00 Known CisBP GAGGTCATGACCCC Direct PWM Open · Scan
M05615_2.00 Known CisBP GGGGTCAAAGGTCAA Direct PWM Open · Scan
M05616_2.00 Known CisBP GAGGTCATGACCTC Direct PWM Open · Scan
M05617_2.00 Known CisBP GGGGTCAAAGGTCAA Direct PWM Open · Scan
M05618_2.00 Known CisBP GAGGTCACGACCTC Direct PWM Open · Scan
M05879_2.00 Known CisBP AGGTCAAAGGTCAAA Direct PWM Open · Scan
M09280_2.00 Known CisBP GGTCAAAGGTCAC Direct PWM Open · Scan
RXRG_HUMAN.H11MO.0.B Known HOCOMOCO GGTCAAAGGTCAC Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 463 aa
132-213

Region 132-213 0 PWM

Residues
82 aa
Domains
PF11825 · Nuclear/hormone receptor activator site AF-1 PF00105 · Double treble clef zinc finger, C4 type
3D models
1 active PDB
Templates
1BY4
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 132-2131 model
Actions
Predicted = Low DIMER_P48443:132:213_1by4_B_1 1by4 132-213 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
25-134PF11825Nuclear/hormone receptor activator site AF-1overlaps 132-213
138-206PF00105Double treble clef zinc finger, C4 typeoverlaps 132-213
258-442PF00104Ligand-binding domain of nuclear hormone receptorNo overlap with loaded model regions