ModCRE DB

Transcription factor

P49335 - POU3F4

POU domain, class 3, transcription factor 4 (Brain-specific homeobox/POU domain protein 4) (Brain-4) (Brn-4) (Octamer-binding protein 9) (Oct-9) (Octamer-binding transcription factor 9) (OTF-9)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 361 aa

15 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known15
MotifPredictionSourceDNA bindingSupportLogoActions
MA0789.1 Known JASPAR TATGCAAAT Direct PWM Open · Scan
M00364_2.00 Known CisBP TAATTAA Direct PWM Open · Scan
M00365_2.00 Known CisBP TGCATAA Direct PWM Open · Scan
M00366_2.00 Known CisBP TTATGCA Direct PWM Open · Scan
M03317_2.00 Known CisBP TATGCAAAT Direct PWM Open · Scan
M03318_2.00 Known CisBP TGCATAAATTA Direct PWM Open · Scan
M05492_2.00 Known CisBP GCTTGCATAATG Direct PWM Open · Scan
M05493_2.00 Known CisBP TTAATGAGATGCAT Direct PWM Open · Scan
M05494_2.00 Known CisBP ATGCATAAATTAC Direct PWM Open · Scan
M05495_2.00 Known CisBP GTATGCGCATAA Direct PWM Open · Scan
M05496_2.00 Known CisBP TTATGCTAATGAG Direct PWM Open · Scan
M05497_2.00 Known CisBP TTAATGAGATGCGT Direct PWM Open · Scan
M05498_2.00 Known CisBP ACGCATAAATTAA Direct PWM Open · Scan
M05499_2.00 Known CisBP TTATGCGCATAA Direct PWM Open · Scan
M05500_2.00 Known CisBP TTATGCAAATGAG Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 361 aa
187-336

Region 187-336 0 PWM

Residues
150 aa
Domains
PF00157 · Pou domain - N-terminal to homeobox domain PF00046 · Homeodomain
3D models
1 active PDB
Templates
5WC9
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 187-3361 model
Actions
Predicted = Low DIMER_P49335:187:336_5wc9_A_1 5wc9 187-336 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
190-260PF00157Pou domain - N-terminal to homeobox domainoverlaps 187-336
279-335PF00046Homeodomainoverlaps 187-336