ModCRE DB

Transcription factor

P49639 - HOXA1

Homeobox protein Hox-A1 (Homeobox protein Hox-1F)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 335 aa

9 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known9
MotifPredictionSourceDNA bindingSupportLogoActions
M04959_2.00 Known CisBP GTAATTAC Direct PWM Open · Scan
MA1495.1 Known JASPAR GTAATTAC Direct PWM Open · Scan
MA1495.2 Known JASPAR TAATTA Direct PWM Open · Scan
MA1931.1 Known JASPAR ACCGGAAGTAATTA Direct PWM Open · Scan
M03096_2.00 Known CisBP GTTAATTACC Direct PWM Open · Scan
M04960_2.00 Known CisBP GTAATTAC Direct PWM Open · Scan
M04961_2.00 Known CisBP TTAATGAT Direct PWM Open · Scan
M09133_2.00 Known CisBP TTGATGGATG Direct PWM Open · Scan
HXA1_HUMAN.H11MO.0.C Known HOCOMOCO TTGATGGATG Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 335 aa
202-290

Region 202-290 0 PWM

Residues
89 aa
Domains
PF00046 · Homeodomain
3D models
1 active PDB
Templates
1B72
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 202-2901 model
Actions
Predicted = Low DIMER_P49639:202:290_1b72_A_1 1b72 202-290 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
233-286PF00046Homeodomainoverlaps 202-290