ModCRE DB

Transcription factor

P49711 - CTCF

Transcriptional repressor CTCF (11-zinc finger protein) (CCCTC-binding factor) (CTCFL paralog)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 727 aa

82 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known82
MotifPredictionSourceDNA bindingSupportLogoActions
MA0139.1 Known JASPAR TGGCCACCAGGGGGCGCTA Direct PWM Open · Scan
MA0139.2 Known JASPAR GCCACCAGGGGGCGC Direct PWM Open · Scan
MA1929.1 Known JASPAR CTGCAGTTCCAGCTGTGGCCACCAGGGGGCGCTA Direct PWM Open · Scan
MA1929.2 Known JASPAR CTGCAGTTCCAGCTGTGGCCACCAGGGGGCG Direct PWM Open · Scan
MA1930.1 Known JASPAR CTGCAGTTCCCCCTTCTGGCCACTAGGGGGCGCTA Direct PWM Open · Scan
MA1930.2 Known JASPAR CTGCAGTTCCCCCTTCTGGCCACTAGGGGGCGC Direct PWM Open · Scan
M02878_2.00 Known CisBP AGCGCCACCTAGTGGTA Direct PWM Open · Scan
M05846_2.00 Known CisBP CCCAATAGCGCCCCCTA Direct PWM Open · Scan
M07550_2.00 Known CisBP GTGCCCCCTGGTGGC Direct PWM Open · Scan
M07551_2.00 Known CisBP TTTTTATTTTT Direct PWM Open · Scan
M07552_2.00 Known CisBP AAACAGAAATCCCCTGTGT Direct PWM Open · Scan
M07862_2.00 Known CisBP ACAGCGCCCCCTGGTGGCCAC Direct PWM Open · Scan
M07863_2.00 Known CisBP CGGCGCCCCCTGGTGG Direct PWM Open · Scan
M07864_2.00 Known CisBP AGCGCCCCCTGGTGG Direct PWM Open · Scan
M07865_2.00 Known CisBP CTGGCGCCCCCTGGTG Direct PWM Open · Scan
M07866_2.00 Known CisBP GCGCCCTCTGGTGGC Direct PWM Open · Scan
M07867_2.00 Known CisBP GCCCTCTAGTGGC Direct PWM Open · Scan
M07868_2.00 Known CisBP GCGCCCCCTGGTGGC Direct PWM Open · Scan
M07869_2.00 Known CisBP GCGCCCCCTGGTGGC Direct PWM Open · Scan
M07870_2.00 Known CisBP GCGCCCCCTGGTGGC Direct PWM Open · Scan
M07871_2.00 Known CisBP GCCCCCTGGTGGCCG Direct PWM Open · Scan
M07872_2.00 Known CisBP GGCGCCCCCTGGTGG Direct PWM Open · Scan
M07873_2.00 Known CisBP CTCGGGCGCCCCCTGGTGGCC Direct PWM Open · Scan
M07874_2.00 Known CisBP GGCGCCCCCTGGTGG Direct PWM Open · Scan
M07875_2.00 Known CisBP GCGCCCCCTGGTGGC Direct PWM Open · Scan
M07876_2.00 Known CisBP GCGCCCCCTGGTGGC Direct PWM Open · Scan
M07877_2.00 Known CisBP GGCGCCCCCTGGTGG Direct PWM Open · Scan
M07878_2.00 Known CisBP GCGCCCCCTGGTGGC Direct PWM Open · Scan
M07879_2.00 Known CisBP GCGCCCCCTGGTGGC Direct PWM Open · Scan
M07880_2.00 Known CisBP GCCCCCTGGTGGCCA Direct PWM Open · Scan
M07881_2.00 Known CisBP CGCCCCCTGGTGGCC Direct PWM Open · Scan
M07882_2.00 Known CisBP CGCCCCCTGGTG Direct PWM Open · Scan
M07883_2.00 Known CisBP TGGCGCCCCCTGGTGGC Direct PWM Open · Scan
M07884_2.00 Known CisBP GCGCCCCCTGGTGGC Direct PWM Open · Scan
M07885_2.00 Known CisBP GCGCCCCCTGGTGGC Direct PWM Open · Scan
M07886_2.00 Known CisBP GCGCCCCCTGGTGGC Direct PWM Open · Scan
M07887_2.00 Known CisBP GGCGCCCCCTGGTGGCCA Direct PWM Open · Scan
M07888_2.00 Known CisBP CGCCCCCTGGTGGCC Direct PWM Open · Scan
M07889_2.00 Known CisBP CGCCCCCTGGTGGC Direct PWM Open · Scan
M07890_2.00 Known CisBP CGCCCTCTGGTGG Direct PWM Open · Scan
M07891_2.00 Known CisBP GGCGCCCCCTGGTGGCCA Direct PWM Open · Scan
M07892_2.00 Known CisBP AGCGCCCCCTGGTGG Direct PWM Open · Scan
M07893_2.00 Known CisBP GTGCCCCCTGGTGGC Direct PWM Open · Scan
M07894_2.00 Known CisBP CCGGCGCCCCCTGGTGG Direct PWM Open · Scan
M07895_2.00 Known CisBP ATAGCGCCCCCTGGTGGC Direct PWM Open · Scan
M07896_2.00 Known CisBP AGCGCCCCCTGGTGG Direct PWM Open · Scan
M07897_2.00 Known CisBP AGTGCCACCTAGTGG Direct PWM Open · Scan
M07898_2.00 Known CisBP CGCCCCCTGGTGGC Direct PWM Open · Scan
M07899_2.00 Known CisBP ATAGCGCCCCCTGGTGGCCA Direct PWM Open · Scan
M07900_2.00 Known CisBP CTGGCGCCCCCTGGTGG Direct PWM Open · Scan
M07901_2.00 Known CisBP CCCTCTGGTGG Direct PWM Open · Scan
M07902_2.00 Known CisBP AGCGCCCCCTGGTGG Direct PWM Open · Scan
M07903_2.00 Known CisBP CGCCCCCTGGTGG Direct PWM Open · Scan
M07904_2.00 Known CisBP GCGCCCCCTGGTGGC Direct PWM Open · Scan
M07905_2.00 Known CisBP CGCCCCCTGGTG Direct PWM Open · Scan
M07906_2.00 Known CisBP TATAGCGCCCTCTGGTGG Direct PWM Open · Scan
M07907_2.00 Known CisBP TAGCGCCCCCTGGTGGCC Direct PWM Open · Scan
M07908_2.00 Known CisBP CCCGGCGCCCCCTGGTGGCCG Direct PWM Open · Scan
M07909_2.00 Known CisBP AGTGCCATCTAGTGG Direct PWM Open · Scan
M07910_2.00 Known CisBP CTCCGGCGCCCCCTGGTGGC Direct PWM Open · Scan
M07911_2.00 Known CisBP GGCGCCCCCTGGTGGCCA Direct PWM Open · Scan
M07912_2.00 Known CisBP GCGCCCCCTGGTGGC Direct PWM Open · Scan
M07913_2.00 Known CisBP GCGCCCCCTGGTGGC Direct PWM Open · Scan
M07914_2.00 Known CisBP GCGCCCCCTGGTGGC Direct PWM Open · Scan
M07915_2.00 Known CisBP TAGTGCCCCCTAGTGGCCAAA Direct PWM Open · Scan
M07916_2.00 Known CisBP TAGTGCCATCTGGTGGC Direct PWM Open · Scan
M07917_2.00 Known CisBP GCGCCCCCTGGTGGC Direct PWM Open · Scan
M07918_2.00 Known CisBP GCGCCCCCTGGTGG Direct PWM Open · Scan
M07919_2.00 Known CisBP AGCGCCCCCTGGTGG Direct PWM Open · Scan
M07920_2.00 Known CisBP AGCGCCCCCTGGTGGCCA Direct PWM Open · Scan
M07921_2.00 Known CisBP CGCCCCCTGGTGGCC Direct PWM Open · Scan
M07922_2.00 Known CisBP CGCCCCCTGGTGG Direct PWM Open · Scan
M07923_2.00 Known CisBP CGCCCCCTGGTGGCC Direct PWM Open · Scan
M07924_2.00 Known CisBP GGCGCCCCCTGGTGG Direct PWM Open · Scan
M07925_2.00 Known CisBP GGCGCCCCCTGGTGG Direct PWM Open · Scan
M08087_2.00 Known CisBP TAGCGCCCCCTGGTGGCCA Direct PWM Open · Scan
M08238_2.00 Known CisBP GCGCCCCCTGGTGGC Direct PWM Open · Scan
M08289_2.00 Known CisBP AGCGCCCCCTGCTGG Direct PWM Open · Scan
M08869_2.00 Known CisBP TGGCGCCCCCTGGTGGCCA Direct PWM Open · Scan
M09503_2.00 Known CisBP ATAGTGCCACCTGGTGGCCA Direct PWM Open · Scan
M09504_2.00 Known CisBP TGCAGTTCCAACAGTGGCCA Direct PWM Open · Scan
CTCF_HUMAN.H11MO.0.A Known HOCOMOCO TGGCCACCAGGGGGCGCCA Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 727 aa
294-462

Region 294-462 0 PWM

Residues
169 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF23611 · C2H2 zinc finger PF00096 · Zinc finger, C2H2 type
3D models
1 active PDB
Templates
5T0U
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 294-4621 model
Actions
Predicted = Low TFS_P49711:294:462_5t0u_A_1 5t0u 294-462 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
266-288PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
294-316PF00096Zinc finger, C2H2 typeoverlaps 294-462
322-345PF00096Zinc finger, C2H2 typeoverlaps 294-462
379-404PF23611C2H2 zinc fingeroverlaps 294-462
437-460PF00096Zinc finger, C2H2 typeoverlaps 294-462
555-573PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions