ModCRE DB

Transcription factor

P51523 - ZNF84

Zinc finger protein 84 (Zinc finger protein HPF2)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 738 aa

93 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known1
MotifPredictionSourceDNA bindingSupportLogoActions
M07736_2.00 Known CisBP TTTCCTGTTCCTGCTTTTTTC Direct PWM Open · Scan
Nearest Neighbor (>70%)1
MotifPredictionSourceDNA bindingSupportLogoActions
M00944_2.00 NN 70+% CisBP TCGCTATAA 70.5% identity Open · Scan
Nearest Neighbor (70% - 40%)91
MotifPredictionSourceDNA bindingSupportLogoActions
M00939_2.00 NN 70-40% CisBP CCACCTCA 69.4% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 69.4% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 68.2% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 67.8% identity Open · Scan
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 67.7% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 67.0% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 67.0% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 65.8% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 65.8% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 65.8% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 64.9% identity Open · Scan
M07610_2.00 NN 70-40% CisBP CCTTCTTCCTCCCCCCTGCCCACC 63.4% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 62.6% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 62.3% identity Open · Scan
M08887_2.00 NN 70-40% CisBP CCTCCTCCAGGAAGCCTTCCCTGA 62.2% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 62.1% identity Open · Scan
M07613_2.00 NN 70-40% CisBP TCACTCAGTCATTCA 61.7% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 61.4% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 60.7% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 60.3% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 60.3% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 60.0% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 59.3% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 59.1% identity Open · Scan
M07600_2.00 NN 70-40% CisBP GCATTAGC 58.7% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 58.5% identity Open · Scan
M07620_2.00 NN 70-40% CisBP TTGGATCTGTGGATTCATGTCTTTCAT 58.4% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 58.2% identity Open · Scan
M08373_2.00 NN 70-40% CisBP CCCCCTGGCTCTTCCTCT 58.0% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 57.9% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 57.8% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 57.8% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 57.7% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 57.6% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 57.5% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 57.4% identity Open · Scan
M05855_2.00 NN 70-40% CisBP GTATTATACCCAGCT 57.2% identity Open · Scan
M08309_2.00 NN 70-40% CisBP AAAAACCCCCCTGCAGAGCCCAGCCCT 57.0% identity Open · Scan
MA1596.1 NN 70-40% JASPAR GCCTCAGCCTCCCGAG 56.8% identity Open · Scan
M07667_2.00 NN 70-40% CisBP CCGCACAGGCCCCCGGGCCCC 56.7% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 56.7% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 56.3% identity Open · Scan
M08311_2.00 NN 70-40% CisBP CTGGAACAGAAGGGGCGA 55.9% identity Open · Scan
M04536_2.00 NN 70-40% CisBP ACGTAACCCGATACC 55.7% identity Open · Scan
M08392_2.00 NN 70-40% CisBP CTTCACCTGCTGAGG 55.3% identity Open · Scan
M00609_2.00 NN 70-40% CisBP GGAAGCCCTA 55.0% identity Open · Scan
M01456_2.00 NN 70-40% CisBP GTGATCGGCG 54.7% identity Open · Scan
M07582_2.00 NN 70-40% CisBP TCCCTG 54.5% identity Open · Scan
M07633_2.00 NN 70-40% CisBP CTCTCGTTGTGCCTTTGCCAT 54.5% identity Open · Scan
M07660_2.00 NN 70-40% CisBP CCGCGCCTACCTGAGGGCGCGGGCCTGGGG 54.4% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 54.4% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 54.2% identity Open · Scan
M07656_2.00 NN 70-40% CisBP TGTCTAGTAAGTCTA 54.0% identity Open · Scan
M00786_2.00 NN 70-40% CisBP TATATATAT 53.8% identity Open · Scan
M04590_2.00 NN 70-40% CisBP TGCGCTAACCATTGC 53.8% identity Open · Scan
M08859_2.00 NN 70-40% CisBP CATTTTTTCCTCCTAGGCCT 53.8% identity Open · Scan
M08367_2.00 NN 70-40% CisBP GGGGTGATGACCACTCTGGCTTCTTAC 53.5% identity Open · Scan
M07725_2.00 NN 70-40% CisBP AAGCACTGTACT 53.4% identity Open · Scan
MA0528.1 NN 70-40% JASPAR GGAGGAGGAGGGGGAGGAGGA 53.2% identity Open · Scan
M01474_2.00 NN 70-40% CisBP CGCCGATCAC 52.9% identity Open · Scan
M07562_2.00 NN 70-40% CisBP GAAAAAAAC 52.9% identity Open · Scan
M07648_2.00 NN 70-40% CisBP GCTTGCAAAAAAAATTTAACTCCCAGCTC 52.8% identity Open · Scan
M08283_2.00 NN 70-40% CisBP GACTTTTATTTT 52.6% identity Open · Scan
M07607_2.00 NN 70-40% CisBP GGCTCCACG 52.5% identity Open · Scan
M08314_2.00 NN 70-40% CisBP ATTCATCAAGGTCCTCAACAATGG 52.5% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 52.3% identity Open · Scan
M07723_2.00 NN 70-40% CisBP CCGCTGCTCCCTGCT 51.8% identity Open · Scan
MA0740.1 NN 70-40% JASPAR GGCCACGCCCCCTT 51.8% identity Open · Scan
M07587_2.00 NN 70-40% CisBP CCCCCTCCCCAGTCGAGCCCCCGC 51.7% identity Open · Scan
M07702_2.00 NN 70-40% CisBP CTTCTTCCTTGG 51.6% identity Open · Scan
M08291_2.00 NN 70-40% CisBP AATCCAGCCCTAGACTCTCCC 51.6% identity Open · Scan
M08263_2.00 NN 70-40% CisBP ATCTCGGCACTTTGGGAGGCCA 51.5% identity Open · Scan
M00764_2.00 NN 70-40% CisBP GTCTACAC 51.2% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 51.2% identity Open · Scan
M08908_2.00 NN 70-40% CisBP GCTGCTGCTTCTGCTG 51.2% identity Open · Scan
M08917_2.00 NN 70-40% CisBP GCTGAGCCATGTGGGGTGCT 51.2% identity Open · Scan
M07627_2.00 NN 70-40% CisBP CAGTCACCTTCTGG 51.1% identity Open · Scan
M01470_2.00 NN 70-40% CisBP CCCCCCGC 50.9% identity Open · Scan
M03671_2.00 NN 70-40% CisBP ATTACCATACAAGTGCAC 50.8% identity Open · Scan
M07770_2.00 NN 70-40% CisBP CTTGGACTT 50.8% identity Open · Scan
M03710_2.00 NN 70-40% CisBP CTCACGCCCCCC 50.6% identity Open · Scan
M05844_2.00 NN 70-40% CisBP TCACCTGT 50.6% identity Open · Scan
M08342_2.00 NN 70-40% CisBP GCTCTGCCTCCCTCT 50.6% identity Open · Scan
MA1154.1 NN 70-40% JASPAR CTTTCCCACAACACGAC 50.6% identity Open · Scan
M08366_2.00 NN 70-40% CisBP GTTTGCTGCTTACAA 50.3% identity Open · Scan
M07646_2.00 NN 70-40% CisBP CTTTTTTTT 50.1% identity Open · Scan
M07628_2.00 NN 70-40% CisBP AGTGGTTCTGCTTCT 50.0% identity Open · Scan
M07678_2.00 NN 70-40% CisBP CCCGCCCCCTCCTCCCCCTTCCCACCC 50.0% identity Open · Scan
M08540_2.00 NN 70-40% CisBP CCCCT 50.0% identity Open · Scan
M10303_2.00 NN 70-40% CisBP TACTGGGAATACC 50.0% identity Open · Scan
MA1656.1 NN 70-40% JASPAR CCAAGCCCAACCAG 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 738 aa
260-370

Region 260-370 0 PWM

Residues
111 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
1 active PDB
Templates
5EGB
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 260-3701 model
Actions
Predicted = Low TFS_P51523:260:370_5egb_A_1 5egb 260-370 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
8-48PF01352KRAB boxNo overlap with loaded model regions
207-229PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
237-257PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
263-285PF00096Zinc finger, C2H2 typeoverlaps 260-370
291-313PF00096Zinc finger, C2H2 typeoverlaps 260-370
321-341PF00096Zinc finger, C2H2 typeoverlaps 260-370
347-369PF00096Zinc finger, C2H2 typeoverlaps 260-370
377-397PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
403-425PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
435-453PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
459-481PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
487-509PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
515-537PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
543-565PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
571-593PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
599-621PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
627-649PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
655-677PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
685-705PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
711-733PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions