ModCRE DB

Transcription factor

P51858 - HDGF

Hepatoma-derived growth factor (HDGF) (High mobility group protein 1-like 2) (HMG-1L2)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 240 aa

5 Generated PWM 5 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE5
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_sp_P51858_HDGF_HUMAN:7:97_5xsk_B_1 ModCRE Homology model CGGGTTCC Region 7-97 · 1 3D model Open · Scan
TFS_sp_P51858_HDGF_HUMAN:8:96_8pc6_L_1 ModCRE Homology model GGCGCGGGGCTT Region 8-96 · 1 3D model Open · Scan
TFS_sp_P51858_HDGF_HUMAN:8:96_8peo_K_1 ModCRE Homology model ATCCCCCCAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA Region 8-96 · 1 3D model Open · Scan
TFS_sp_P51858_HDGF_HUMAN:8:96_8pep_L_1 ModCRE Homology model GGCGCGGGGCCGC Region 8-96 · 1 3D model Open · Scan
TFS_sp_P51858_HDGF_HUMAN:8:97_5xsk_A_1 ModCRE Homology model TTCCGCG Region 8-97 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 240 aa
7-97

Region 7-97 5 PWM

Residues
91 aa
Domains
PF00855 · PWWP domain
3D models
5 active PDBs · 5 summary rows
Templates
5XSK, 8PC6, 8PEO, 8PEP
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
5 active PDB models 5 summary rows
Region 7-975 models · 5 summary rows
Actions
Predicted = Low TFS_sp_P51858_HDGF_HUMAN:7:97_5xsk_B_1 5xsk 7-97 View model · PDB
Predicted = Low TFS_sp_P51858_HDGF_HUMAN:8:96_8pc6_L_1 8pc6 8-96 View model · PDB
Predicted = Low TFS_sp_P51858_HDGF_HUMAN:8:96_8peo_K_1 8peo 8-96 View model · PDB
Predicted = Low TFS_sp_P51858_HDGF_HUMAN:8:96_8pep_L_1 8pep 8-96 View model · PDB
Predicted = Low TFS_sp_P51858_HDGF_HUMAN:8:97_5xsk_A_1 5xsk 8-97 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 5xsk 7:97 7 97 P:B · DNA:D,F 100.0% / 100.0% 100 View · PDB TFS_sp_P51858_HDGF_HUMAN:7:97_5xsk_B_1
2 5xsk 7:97 8 97 P:A · DNA:D,F 100.0% / 100.0% 100 View · PDB TFS_sp_P51858_HDGF_HUMAN:8:97_5xsk_A_1
3 8pep 7:97 8 96 P:L · DNA:I,J 71.9% / 85.4% 97 View · PDB TFS_sp_P51858_HDGF_HUMAN:8:96_8pep_L_1
4 8peo 7:97 8 96 P:K · DNA:I,J 71.9% / 85.4% 97 View · PDB TFS_sp_P51858_HDGF_HUMAN:8:96_8peo_K_1
5 8pc6 7:97 8 96 P:L · DNA:I,J 71.9% / 85.4% 97 View · PDB TFS_sp_P51858_HDGF_HUMAN:8:96_8pc6_L_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
13-92PF00855PWWP domainoverlaps 7-97