ModCRE DB

Transcription factor

P52738 - ZNF140

Zinc finger protein 140

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 457 aa

7 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known7
MotifPredictionSourceDNA bindingSupportLogoActions
MA1589.1 Known JASPAR TAGGAGTGGAATTGCTGGGTC Direct PWM Open · Scan
MA1589.2 Known JASPAR AGGAGTGGAATTGCTGGGT Direct PWM Open · Scan
M04621_2.00 Known CisBP AGCAATTCCGCTCA Direct PWM Open · Scan
M04622_2.00 Known CisBP AGCAATTCCGCTCA Direct PWM Open · Scan
M08372_2.00 Known CisBP CAATTCCGCTCCCTCCCCCTCCCC Direct PWM Open · Scan
M08945_2.00 Known CisBP TATGACCCAGCAATTCCGCTCCTA Direct PWM Open · Scan
ZN140_HUMAN.H11MO.0.C Known HOCOMOCO TATGACCCAGCAATTCCGCTCCTA Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 457 aa
143-295

Region 143-295 0 PWM

Residues
153 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
1 active PDB
Templates
2I13
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 143-2951 model
Actions
Predicted = Low TFS_P52738:143:295_2i13_A_1 2i13 143-295 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
5-46PF01352KRAB boxNo overlap with loaded model regions
163-183PF00096Zinc finger, C2H2 typeoverlaps 143-295
189-211PF00096Zinc finger, C2H2 typeoverlaps 143-295
217-239PF00096Zinc finger, C2H2 typeoverlaps 143-295
245-267PF00096Zinc finger, C2H2 typeoverlaps 143-295
273-295PF00096Zinc finger, C2H2 typeoverlaps 143-295
301-323PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
357-379PF13912C2H2-type zinc fingerNo overlap with loaded model regions
385-407PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
413-435PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions