ModCRE DB

Transcription factor

P52742 - ZNF135

Zinc finger protein 135 (Zinc finger protein 61) (Zinc finger protein 78-like 1)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 658 aa

3 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known3
MotifPredictionSourceDNA bindingSupportLogoActions
MA1587.1 Known JASPAR CCTCGACCTCCTGA Direct PWM Open · Scan
M05851_2.00 Known CisBP GGCTCGACCTCAAAG Direct PWM Open · Scan
M07647_2.00 Known CisBP TCGACCTCC Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 658 aa
211-489

Region 211-489 0 PWM

Residues
279 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
1 active PDB
Templates
5WJQ
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 211-4891 model
Actions
Predicted = Low TFS_P52742:211:489_5wjq_D_1 5wjq 211-489 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
14-54PF01352KRAB boxNo overlap with loaded model regions
214-236PF00096Zinc finger, C2H2 typeoverlaps 211-489
242-264PF00096Zinc finger, C2H2 typeoverlaps 211-489
270-292PF00096Zinc finger, C2H2 typeoverlaps 211-489
298-320PF00096Zinc finger, C2H2 typeoverlaps 211-489
326-348PF00096Zinc finger, C2H2 typeoverlaps 211-489
354-376PF00096Zinc finger, C2H2 typeoverlaps 211-489
382-404PF00096Zinc finger, C2H2 typeoverlaps 211-489
410-432PF00096Zinc finger, C2H2 typeoverlaps 211-489
440-460PF00096Zinc finger, C2H2 typeoverlaps 211-489
466-488PF00096Zinc finger, C2H2 typeoverlaps 211-489
494-516PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
522-544PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
550-572PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
580-600PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
606-628PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
634-656PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions