Region 637-723 4 PWM
- Residues
- 87 aa
- Domains
- PF00439 · Bromodomain
- 3D models
- 4 active PDBs · 4 summary rows
- Templates
- 7W9V, 8HAG, 8HAI, 8HAK
- Sources
- Predicted = Low
Transcription factor
P55201 - BRPF1
Peregrin (Bromodomain and PHD finger-containing protein 1) (Protein Br140)
Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 1214 aa
Motif Prediction
Only entries with a generated matrix are shown here.
Known0
No generated PWM in this category.
Nearest Neighbor (>70%)0
No generated PWM in this category.
Nearest Neighbor (70% - 40%)0
No generated PWM in this category.
ModCRE4
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| TFS_sp_P55201_BRPF1_HUMAN:637:723_7w9v_K_1 | ModCRE | Homology model | GGCTCTTTC | Region 637-723 · 1 3D model | Open · Scan | |
| TFS_sp_P55201_BRPF1_HUMAN:637:723_8hag_K_1 | ModCRE | Homology model | TTTTTACCC | Region 637-723 · 1 3D model | Open · Scan | |
| TFS_sp_P55201_BRPF1_HUMAN:637:723_8hai_K_1 | ModCRE | Homology model | TTTTTTCCC | Region 637-723 · 1 3D model | Open · Scan | |
| TFS_sp_P55201_BRPF1_HUMAN:637:723_8hak_N_1 | ModCRE | Homology model | CTTTTTA | Region 637-723 · 1 3D model | Open · Scan |
Model-supported DNA-binding regions
Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.
1
1214 aa
637-723
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
4 active PDB models
4 summary rows
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
Region 637-7234 models · 4 summary rows
| Actions | ||||
|---|---|---|---|---|
| Predicted = Low | TFS_sp_P55201_BRPF1_HUMAN:637:723_7w9v_K_1 | 7w9v | 637-723 | View model · PDB |
| Predicted = Low | TFS_sp_P55201_BRPF1_HUMAN:637:723_8hag_K_1 | 8hag | 637-723 | View model · PDB |
| Predicted = Low | TFS_sp_P55201_BRPF1_HUMAN:637:723_8hai_K_1 | 8hai | 637-723 | View model · PDB |
| Predicted = Low | TFS_sp_P55201_BRPF1_HUMAN:637:723_8hak_N_1 | 8hak | 637-723 | View model · PDB |
Model-summary evidence imported for this region.
| Rank | Template | Domain | N-tails | C-tails | Chains | Identity / similarity | Coverage | Model file |
|---|---|---|---|---|---|---|---|---|
| 1 | 8hai | 637:723 | 637 | 723 | P:K · DNA:I,J | 34.4% / 53.3% | 16 | View · PDB TFS_sp_P55201_BRPF1_HUMAN:637:723_8hai_K_1 |
| 2 | 7w9v | 637:723 | 637 | 723 | P:K · DNA:I,J | 34.4% / 53.3% | 15 | View · PDB TFS_sp_P55201_BRPF1_HUMAN:637:723_7w9v_K_1 |
| 3 | 8hag | 637:723 | 637 | 723 | P:K · DNA:I,J | 34.4% / 53.3% | 16 | View · PDB TFS_sp_P55201_BRPF1_HUMAN:637:723_8hag_K_1 |
| 4 | 8hak | 637:723 | 637 | 723 | P:N · DNA:J,K | 34.4% / 53.3% | 16 | View · PDB TFS_sp_P55201_BRPF1_HUMAN:637:723_8hak_N_1 |
View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.
Domains
Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.
| Residues | PFAM | Domain | Used by prediction region? |
|---|---|---|---|
| 106-255 | PF10513 | Enhancer of polycomb-like | No overlap with loaded model regions |
| 288-320 | PF13831 | PHD-finger | No overlap with loaded model regions |
| 329-447 | PF13832 | PHD-zinc-finger like domain | No overlap with loaded model regions |
| 638-719 | PF00439 | Bromodomain | overlaps 637-723 |
| 1087-1196 | PF00855 | PWWP domain | No overlap with loaded model regions |