ModCRE DB

Transcription factor

P55317 - FOXA1

Hepatocyte nuclear factor 3-alpha (HNF-3-alpha) (HNF-3A) (Forkhead box protein A1) (Transcription factor 3A) (TCF-3A)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 472 aa

22 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known22
MotifPredictionSourceDNA bindingSupportLogoActions
MA0148.1 Known JASPAR TGTTTACTTTG Direct PWM Open · Scan
MA0148.2 Known JASPAR TGTTTACTTTG Direct PWM Open · Scan
MA0148.3 Known JASPAR TCCATGTTTACTTTG Direct PWM Open · Scan
MA0148.4 Known JASPAR ATGTAAACATGT Direct PWM Open · Scan
MA0148.5 Known JASPAR GTAAACAT Direct PWM Open · Scan
M04817_2.00 Known CisBP TTGTTTACACAA Direct PWM Open · Scan
M04818_2.00 Known CisBP TTATGTAAACAT Direct PWM Open · Scan
M04819_2.00 Known CisBP CCTTAAGTAAACAAAC Direct PWM Open · Scan
M04820_2.00 Known CisBP CTAAGCAAATATTTACATAA Direct PWM Open · Scan
M04821_2.00 Known CisBP CGTTAAGTAAACAAAC Direct PWM Open · Scan
M04822_2.00 Known CisBP TTAAGCAAATATTTACATAA Direct PWM Open · Scan
M07960_2.00 Known CisBP CCCTAAGTAAACAAA Direct PWM Open · Scan
M07961_2.00 Known CisBP CTAAGTAAACA Direct PWM Open · Scan
M07962_2.00 Known CisBP CTGAGTAAACA Direct PWM Open · Scan
M08028_2.00 Known CisBP AAAGCAAACA Direct PWM Open · Scan
M08117_2.00 Known CisBP TCCATGTTTACTTTG Direct PWM Open · Scan
M08199_2.00 Known CisBP CTAAGTAAACAAG Direct PWM Open · Scan
M09090_2.00 Known CisBP CCAAAGTAAACA Direct PWM Open · Scan
M09543_2.00 Known CisBP AAAGTAAACA Direct PWM Open · Scan
M09544_2.00 Known CisBP TGCCAAAATAAACAAA Direct PWM Open · Scan
M09545_2.00 Known CisBP AAAGTAAACA Direct PWM Open · Scan
FOXA1_HUMAN.H11MO.0.A Known HOCOMOCO TGTTTACTTTGG Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 472 aa
170-231

Region 170-231 0 PWM

Residues
62 aa
Domains
PF00250 · Forkhead domain
3D models
1 active PDB
Templates
3QRF
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 170-2311 model
Actions
Predicted = Low DIMER_P55317:170:231_3qrf_G_1 3qrf 170-231 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
17-169PF08430Forkhead N-terminal regionNo overlap with loaded model regions
170-255PF00250Forkhead domainoverlaps 170-231
397-461PF09354HNF3 C-terminal domainNo overlap with loaded model regions