ModCRE DB

Transcription factor

P55347 - PKNOX1

Homeobox protein PKNOX1 (Homeobox protein PREP-1) (PBX/knotted homeobox 1)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 436 aa

10 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known10
MotifPredictionSourceDNA bindingSupportLogoActions
MA0782.1 Known JASPAR TGACAGGTGTCA Direct PWM Open · Scan
MA0782.2 Known JASPAR TTTGAGTGACAGCTA Direct PWM Open · Scan
MA0782.3 Known JASPAR TGAGTGACAG Direct PWM Open · Scan
M03178_2.00 Known CisBP TGACAGGTGTCA Direct PWM Open · Scan
M05206_2.00 Known CisBP TGACAGCTGTCA Direct PWM Open · Scan
M05207_2.00 Known CisBP TGACAGCTGTCA Direct PWM Open · Scan
M05208_2.00 Known CisBP TGACAGCTGTCA Direct PWM Open · Scan
M05209_2.00 Known CisBP TGACAGCTGTCA Direct PWM Open · Scan
M09150_2.00 Known CisBP TGATTGACAGG Direct PWM Open · Scan
PKNX1_HUMAN.H11MO.0.B Known HOCOMOCO TGATTGACAGG Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 436 aa
260-322

Region 260-322 0 PWM

Residues
63 aa
Domains
PF05920 · Homeobox KN domain
3D models
1 active PDB
Templates
6FQP
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 260-3221 model
Actions
Predicted = Low DIMER_P55347:260:322_6fqp_B_1 6fqp 260-322 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
51-157PF16493TALE/MEIS homeobox family N-terminal domainNo overlap with loaded model regions
277-316PF05920Homeobox KN domainoverlaps 260-322