ModCRE DB

Transcription factor

P55771 - PAX9

Paired box protein Pax-9

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 341 aa

5 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known5
MotifPredictionSourceDNA bindingSupportLogoActions
MA0781.1 Known JASPAR CGTCACGCATGACTGCA Direct PWM Open · Scan
MA0781.2 Known JASPAR CGTCACGCATGACTGC Direct PWM Open · Scan
M03444_2.00 Known CisBP TGCAGTCATGCGTGACG Direct PWM Open · Scan
M05689_2.00 Known CisBP GCAGTCATGCGTGACGG Direct PWM Open · Scan
M05690_2.00 Known CisBP GCGCTCAAGCGTGACGA Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 341 aa
6-127

Region 6-127 0 PWM

Residues
122 aa
Domains
PF00292 · 'Paired box' domain
3D models
1 active PDB
Templates
1PDN
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 6-1271 model
Actions
Predicted = Low TFS_P55771:6:127_1pdn_C_1 1pdn 6-127 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
6-128PF00292'Paired box' domainoverlaps 6-127