ModCRE DB

Transcription factor

P58304 - VSX2

Visual system homeobox 2 (Ceh-10 homeodomain-containing homolog) (Homeobox protein CHX10)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 361 aa

13 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known13
MotifPredictionSourceDNA bindingSupportLogoActions
MA0726.1 Known JASPAR CTAATTAG Direct PWM Open · Scan
MA0726.2 Known JASPAR CTAATTA Direct PWM Open · Scan
M00285_2.00 Known CisBP AATATATTTTAA Direct PWM Open · Scan
M00286_2.00 Known CisBP TAATTAA Direct PWM Open · Scan
M00287_2.00 Known CisBP ATTAATTAGT Direct PWM Open · Scan
M03124_2.00 Known CisBP CTAATTAG Direct PWM Open · Scan
M05036_2.00 Known CisBP CTAATTAG Direct PWM Open · Scan
M05037_2.00 Known CisBP GTAATTAG Direct PWM Open · Scan
M05038_2.00 Known CisBP TTAACGAG Direct PWM Open · Scan
M05039_2.00 Known CisBP GCTAATTAC Direct PWM Open · Scan
M05040_2.00 Known CisBP CTAACGAG Direct PWM Open · Scan
M05041_2.00 Known CisBP GCTAATTAC Direct PWM Open · Scan
M10676_2.00 Known CisBP TGCGCTAATTAGCC Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 361 aa
147-206

Region 147-206 0 PWM

Residues
60 aa
Domains
PF00046 · Homeodomain
3D models
1 active PDB
Templates
1FJL
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 147-2061 model
Actions
Predicted = Low DIMER_P58304:147:206_1fjl_A_1 1fjl 147-206 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
149-205PF00046Homeodomainoverlaps 147-206
301-318PF03826OAR motifNo overlap with loaded model regions