ModCRE DB

Transcription factor

P78414 - IRX1

Iroquois-class homeodomain protein IRX-1 (Homeodomain protein IRXA1) (Iroquois homeobox protein 1)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 480 aa

15 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known2
MotifPredictionSourceDNA bindingSupportLogoActions
M05283_2.00 Known CisBP TACATGTAATAACATGTA Direct PWM Open · Scan
M05284_2.00 Known CisBP AACGCGTCACTGCGCGTA Direct PWM Open · Scan
Nearest Neighbor (>70%)1
MotifPredictionSourceDNA bindingSupportLogoActions
M06519_2.00 NN 70+% CisBP TAACA 71.8% identity Open · Scan
Nearest Neighbor (70% - 40%)12
MotifPredictionSourceDNA bindingSupportLogoActions
M02229_2.00 NN 70-40% CisBP AGTACATGTTT 68.8% identity Open · Scan
M02064_2.00 NN 70-40% CisBP ATTACAAG 62.3% identity Open · Scan
M06335_2.00 NN 70-40% CisBP ATGATACC 60.6% identity Open · Scan
M00416_2.00 NN 70-40% CisBP AATTACAA 58.1% identity Open · Scan
M08208_2.00 NN 70-40% CisBP GAGTTGTAGT 55.5% identity Open · Scan
M02032_2.00 NN 70-40% CisBP TGACATGTCA 53.5% identity Open · Scan
M00461_2.00 NN 70-40% CisBP ATGATACCC 52.7% identity Open · Scan
M04940_2.00 NN 70-40% CisBP CCGTATCATT 52.7% identity Open · Scan
M05316_2.00 NN 70-40% CisBP ACGCGTACAACGCGT 52.3% identity Open · Scan
M02135_2.00 NN 70-40% CisBP CATGTCAT 52.0% identity Open · Scan
M02161_2.00 NN 70-40% CisBP TGACATGT 52.0% identity Open · Scan
M02168_2.00 NN 70-40% CisBP TTGACATGT 52.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 480 aa
130-185

Region 130-185 0 PWM

Residues
56 aa
Domains
PF05920 · Homeobox KN domain
3D models
1 active PDB
Templates
6FQP
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 130-1851 model
Actions
Predicted = Low DIMER_P78414:130:185_6fqp_B_1 6fqp 130-185 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
145-184PF05920Homeobox KN domainoverlaps 130-185