ModCRE DB

Transcription factor

P78415 - IRX3

Iroquois-class homeodomain protein IRX-3 (Homeodomain protein IRXB1) (Iroquois homeobox protein 3)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 501 aa

19 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known2
MotifPredictionSourceDNA bindingSupportLogoActions
M05319_2.00 Known CisBP TACATGAATATTCATGTA Direct PWM Open · Scan
M05320_2.00 Known CisBP TACGTGATTTAACGCGTA Direct PWM Open · Scan
Nearest Neighbor (>70%)4
MotifPredictionSourceDNA bindingSupportLogoActions
M00453_2.00 NN 70+% CisBP ATTACATGAT 90.3% identity Open · Scan
M06519_2.00 NN 70+% CisBP TAACA 87.3% identity Open · Scan
M05316_2.00 NN 70+% CisBP ACGCGTACAACGCGT 79.7% identity Open · Scan
M02229_2.00 NN 70+% CisBP AGTACATGTTT 73.9% identity Open · Scan
Nearest Neighbor (70% - 40%)13
MotifPredictionSourceDNA bindingSupportLogoActions
M02064_2.00 NN 70-40% CisBP ATTACAAG 64.7% identity Open · Scan
M06335_2.00 NN 70-40% CisBP ATGATACC 60.6% identity Open · Scan
M00456_2.00 NN 70-40% CisBP ATTACAA 59.3% identity Open · Scan
M00416_2.00 NN 70-40% CisBP AATTACAA 57.5% identity Open · Scan
M02032_2.00 NN 70-40% CisBP TGACATGTCA 55.7% identity Open · Scan
M06342_2.00 NN 70-40% CisBP TTTTAACA 55.5% identity Open · Scan
M08208_2.00 NN 70-40% CisBP GAGTTGTAGT 55.5% identity Open · Scan
M00461_2.00 NN 70-40% CisBP ATGATACCC 52.7% identity Open · Scan
M04940_2.00 NN 70-40% CisBP CCGTATCATT 52.7% identity Open · Scan
M02135_2.00 NN 70-40% CisBP CATGTCAT 52.0% identity Open · Scan
M02161_2.00 NN 70-40% CisBP TGACATGT 52.0% identity Open · Scan
M02168_2.00 NN 70-40% CisBP TTGACATGT 52.0% identity Open · Scan
M08574_2.00 NN 70-40% CisBP TTTGACAG 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 501 aa
130-185

Region 130-185 0 PWM

Residues
56 aa
Domains
PF05920 · Homeobox KN domain
3D models
1 active PDB
Templates
6FQP
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 130-1851 model
Actions
Predicted = Low DIMER_P78415:130:185_6fqp_B_1 6fqp 130-185 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
145-184PF05920Homeobox KN domainoverlaps 130-185