ModCRE DB

Transcription factor

P78424 - POU6F2

POU domain, class 6, transcription factor 2 (Retina-derived POU domain factor 1) (RPF-1)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 691 aa

7 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known7
MotifPredictionSourceDNA bindingSupportLogoActions
MA0793.1 Known JASPAR AGCTCATTAT Direct PWM Open · Scan
MA0793.2 Known JASPAR AGCTCATTA Direct PWM Open · Scan
M00362_2.00 Known CisBP GCTAATTAAG Direct PWM Open · Scan
M00363_2.00 Known CisBP ATAATGAG Direct PWM Open · Scan
M03303_2.00 Known CisBP AGCTCATTAT Direct PWM Open · Scan
M03304_2.00 Known CisBP TTAATGAGCTAATTAA Direct PWM Open · Scan
M03305_2.00 Known CisBP TCTAATTAGC Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 691 aa
559-663

Region 559-663 0 PWM

Residues
105 aa
Domains
PF00157 · Pou domain - N-terminal to homeobox domain PF00046 · Homeodomain
3D models
1 active PDB
Templates
1HF0
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 559-6631 model
Actions
Predicted = Low DIMER_P78424:559:663_1hf0_B_1 1hf0 559-663 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
480-525PF00157Pou domain - N-terminal to homeobox domainNo overlap with loaded model regions
559-586PF00157Pou domain - N-terminal to homeobox domainoverlaps 559-663
608-663PF00046Homeodomainoverlaps 559-663