ModCRE DB

Transcription factor

Q00444 - HOXC5

Homeobox protein Hox-C5 (Homeobox protein CP11) (Homeobox protein Hox-3D)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 222 aa

110 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)21
MotifPredictionSourceDNA bindingSupportLogoActions
M00422_2.00 NN 70+% CisBP TTAATGA 99.5% identity Open · Scan
M06248_2.00 NN 70+% CisBP TAATTGCC 78.4% identity Open · Scan
M06261_2.00 NN 70+% CisBP TTAATTA 77.7% identity Open · Scan
MA1498.1 NN 70+% JASPAR GCAATTAC 77.6% identity Open · Scan
MA1501.1 NN 70+% JASPAR GGTAATTAAC 77.6% identity Open · Scan
M09206_2.00 NN 70+% CisBP CATTAATCAA 76.3% identity Open · Scan
M00476_2.00 NN 70+% CisBP TTAATGGCC 75.9% identity Open · Scan
M03799_2.00 NN 70+% CisBP GTAATTAC 75.8% identity Open · Scan
M02166_2.00 NN 70+% CisBP CTAATTAC 74.1% identity Open · Scan
MA0903.1 NN 70+% JASPAR ACTAATTAGC 74.1% identity Open · Scan
M00492_2.00 NN 70+% CisBP TAATTAGC 72.2% identity Open · Scan
M05100_2.00 NN 70+% CisBP TTAACGAC 72.2% identity Open · Scan
M06549_2.00 NN 70+% CisBP TTAATGA 71.6% identity Open · Scan
MA1496.1 NN 70+% JASPAR GTCATTAG 70.5% identity Open · Scan
M00494_2.00 NN 70+% CisBP TTAATTACC 70.3% identity Open · Scan
M05057_2.00 NN 70+% CisBP TTAATTAC 70.3% identity Open · Scan
MA1497.1 NN 70+% JASPAR GGTAATTAAC 70.3% identity Open · Scan
M00392_2.00 NN 70+% CisBP TTAATTAC 70.2% identity Open · Scan
M04959_2.00 NN 70+% CisBP GTAATTAC 70.1% identity Open · Scan
M09196_2.00 NN 70+% CisBP TTGATGGATG 70.1% identity Open · Scan
MA1495.1 NN 70+% JASPAR GTAATTAC 70.1% identity Open · Scan
Nearest Neighbor (70% - 40%)89
MotifPredictionSourceDNA bindingSupportLogoActions
M09204_2.00 NN 70-40% CisBP TTAATGGC 69.4% identity Open · Scan
MA1499.1 NN 70-40% JASPAR ATCATTAG 69.4% identity Open · Scan
MA1504.1 NN 70-40% JASPAR GTCATTAA 69.4% identity Open · Scan
M02214_2.00 NN 70-40% CisBP AATAATTATA 68.5% identity Open · Scan
MA0902.1 NN 70-40% JASPAR AGTAATTAAC 68.4% identity Open · Scan
M06227_2.00 NN 70-40% CisBP TTAATTAT 68.2% identity Open · Scan
MA1500.1 NN 70-40% JASPAR TTAATTAC 67.8% identity Open · Scan
M05105_2.00 NN 70-40% CisBP GTCGTAAAAT 65.6% identity Open · Scan
MA0913.2 NN 70-40% JASPAR GCAATAAAAC 65.6% identity Open · Scan
MA1507.1 NN 70-40% JASPAR ATCATTAG 65.6% identity Open · Scan
M03253_2.00 NN 70-40% CisBP TTTTTATTAC 65.5% identity Open · Scan
M05394_2.00 NN 70-40% CisBP GGTCGTAAAAC 65.5% identity Open · Scan
M09170_2.00 NN 70-40% CisBP TCATAAATCATC 65.5% identity Open · Scan
MA0899.1 NN 70-40% JASPAR GGTAATAAAAA 65.5% identity Open · Scan
MA0905.1 NN 70-40% JASPAR GTCGTAAAAT 65.5% identity Open · Scan
M09680_2.00 NN 70-40% CisBP TTAATTA 65.4% identity Open · Scan
M09193_2.00 NN 70-40% CisBP TTTTATGGCCTT 64.8% identity Open · Scan
MA0900.1 NN 70-40% JASPAR CCTAATTACC 64.5% identity Open · Scan
M06281_2.00 NN 70-40% CisBP TTAATTA 64.4% identity Open · Scan
MA1506.1 NN 70-40% JASPAR GGTCGTAAAAC 63.9% identity Open · Scan
M05272_2.00 NN 70-40% CisBP TTAACGAG 63.3% identity Open · Scan
MA0485.1 NN 70-40% JASPAR GGCCATAAATCAC 63.2% identity Open · Scan
MA0485.2 NN 70-40% JASPAR GTCGTAAAAT 63.2% identity Open · Scan
M00469_2.00 NN 70-40% CisBP TTAATTACC 62.9% identity Open · Scan
MA0893.1 NN 70-40% JASPAR ACTAATTAAA 62.9% identity Open · Scan
M00410_2.00 NN 70-40% CisBP TTTTATGACC 62.8% identity Open · Scan
M09582_2.00 NN 70-40% CisBP ATGATTGATG 62.8% identity Open · Scan
MA1503.1 NN 70-40% JASPAR GTCGTAAAAT 62.8% identity Open · Scan
M02150_2.00 NN 70-40% CisBP TTAATTAA 62.1% identity Open · Scan
M03104_2.00 NN 70-40% CisBP TTAATTACGGTAATTAC 61.4% identity Open · Scan
M03271_2.00 NN 70-40% CisBP GTAATTAC 61.4% identity Open · Scan
MA0661.1 NN 70-40% JASPAR GCTAATTAAC 61.4% identity Open · Scan
MA0706.1 NN 70-40% JASPAR AGTAATTAAC 61.4% identity Open · Scan
M03775_2.00 NN 70-40% CisBP GTTTTATGTGTTTT 61.0% identity Open · Scan
MA0465.1 NN 70-40% JASPAR AAGCCATAAAA 61.0% identity Open · Scan
MA0594.1 NN 70-40% JASPAR GCCATAAATCA 60.8% identity Open · Scan
MA0594.2 NN 70-40% JASPAR GTCGTAAACG 60.8% identity Open · Scan
M02205_2.00 NN 70-40% CisBP CATTAATTACC 60.3% identity Open · Scan
M05019_2.00 NN 70-40% CisBP GGTCGTAAAAC 59.6% identity Open · Scan
MA0878.1 NN 70-40% JASPAR GCAATAAAA 59.6% identity Open · Scan
M00391_2.00 NN 70-40% CisBP TTAATTGCC 59.5% identity Open · Scan
MA1502.1 NN 70-40% JASPAR GCAATTAC 59.5% identity Open · Scan
MA1505.1 NN 70-40% JASPAR GTAATTAC 59.5% identity Open · Scan
M06264_2.00 NN 70-40% CisBP GCTAATTA 59.2% identity Open · Scan
MA0132.2 NN 70-40% JASPAR GTAATTAG 59.1% identity Open · Scan
MA0913.1 NN 70-40% JASPAR GCAATAAAAA 58.6% identity Open · Scan
M06544_2.00 NN 70-40% CisBP GTAATTA 58.3% identity Open · Scan
M06329_2.00 NN 70-40% CisBP CACTAATTA 57.9% identity Open · Scan
M00462_2.00 NN 70-40% CisBP CTAATTG 57.8% identity Open · Scan
M02211_2.00 NN 70-40% CisBP TTAATTAC 57.8% identity Open · Scan
M03276_2.00 NN 70-40% CisBP GCTAATTAGC 57.8% identity Open · Scan
MA0642.1 NN 70-40% JASPAR CCCAATTAGC 57.8% identity Open · Scan
MA0889.1 NN 70-40% JASPAR ACTAATTAGC 57.8% identity Open · Scan
MA0890.1 NN 70-40% JASPAR ACCAATTAGC 57.8% identity Open · Scan
M05312_2.00 NN 70-40% CisBP TTAACGAC 56.9% identity Open · Scan
MA0910.1 NN 70-40% JASPAR TAAATAATTAATGGCTA 56.9% identity Open · Scan
MA0910.2 NN 70-40% JASPAR GCAATTAC 56.9% identity Open · Scan
MA0912.1 NN 70-40% JASPAR TTGAGTTAATTAACCT 56.1% identity Open · Scan
MA0912.2 NN 70-40% JASPAR CTAATTAC 56.1% identity Open · Scan
M06241_2.00 NN 70-40% CisBP CGTTAATTATTT 55.5% identity Open · Scan
M06545_2.00 NN 70-40% CisBP TTAATTA 55.5% identity Open · Scan
MA0887.1 NN 70-40% JASPAR GGTAATTAGC 55.5% identity Open · Scan
MA0888.1 NN 70-40% JASPAR GGTAATTAGC 55.5% identity Open · Scan
MA1473.1 NN 70-40% JASPAR GGCAATAAAAC 55.4% identity Open · Scan
M00388_2.00 NN 70-40% CisBP CTAATTGCTT 54.5% identity Open · Scan
MA0707.1 NN 70-40% JASPAR GGTAATTAAA 54.5% identity Open · Scan
M03832_2.00 NN 70-40% CisBP GGTAATTACC 54.3% identity Open · Scan
M09214_2.00 NN 70-40% CisBP GCATTAATCAA 54.1% identity Open · Scan
M00464_2.00 NN 70-40% CisBP CTAATTACC 53.4% identity Open · Scan
MA0722.1 NN 70-40% JASPAR CTAATTAC 53.4% identity Open · Scan
MA0723.1 NN 70-40% JASPAR CTAATTAC 53.4% identity Open · Scan
M00532_2.00 NN 70-40% CisBP TTAATGACC 52.8% identity Open · Scan
MA0908.1 NN 70-40% JASPAR GTCGTAAAAA 52.6% identity Open · Scan
M06312_2.00 NN 70-40% CisBP TTAATTA 52.3% identity Open · Scan
M06238_2.00 NN 70-40% CisBP TCTTAATTAG 52.1% identity Open · Scan
M02107_2.00 NN 70-40% CisBP TTAATTGCT 51.7% identity Open · Scan
M09181_2.00 NN 70-40% CisBP TTTAATTGTTTT 51.7% identity Open · Scan
MA0875.1 NN 70-40% JASPAR GCAATTAG 51.7% identity Open · Scan
M10761_2.00 NN 70-40% CisBP CATAAAT 51.2% identity Open · Scan
MA0132.1 NN 70-40% JASPAR CTAATT 51.0% identity Open · Scan
M00474_2.00 NN 70-40% CisBP TTTATGACC 50.8% identity Open · Scan
M03798_2.00 NN 70-40% CisBP GGTAATTAGC 50.8% identity Open · Scan
MA0911.1 NN 70-40% JASPAR GGTCGTAAAATT 50.8% identity Open · Scan
MA0027.1 NN 70-40% JASPAR AAGTAGTGCCC 50.7% identity Open · Scan
MA0027.2 NN 70-40% JASPAR CTAATTAG 50.7% identity Open · Scan
M00451_2.00 NN 70-40% CisBP ATTAATTA 50.0% identity Open · Scan
M06900_2.00 NN 70-40% CisBP TCAATAATTAA 50.0% identity Open · Scan
M06912_2.00 NN 70-40% CisBP TCAATAATTGA 50.0% identity Open · Scan
MA0909.1 NN 70-40% JASPAR CCAATAAAAA 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 222 aa
137-215

Region 137-215 0 PWM

Residues
79 aa
Domains
PF00046 · Homeodomain
3D models
1 active PDB
Templates
2R5Y
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 137-2151 model
Actions
Predicted = Low DIMER_Q00444:137:215_2r5y_A_1 2r5y 137-215 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
156-212PF00046Homeodomainoverlaps 137-215