ModCRE DB

Transcription factor

Q00978 - IRF9

Interferon regulatory factor 9 (IRF-9) (IFN-alpha-responsive transcription factor subunit) (ISGF3 p48 subunit) (Interferon-stimulated gene factor 3 gamma) (ISGF-3 gamma) (Transcriptional regulator ISGF3 subunit gamma)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 393 aa

6 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known6
MotifPredictionSourceDNA bindingSupportLogoActions
MA0653.1 Known JASPAR AACGAAACCGAAACT Direct PWM Open · Scan
M03339_2.00 Known CisBP AACGAAACCGAAACT Direct PWM Open · Scan
M05549_2.00 Known CisBP ACGAAACCGAAACTA Direct PWM Open · Scan
M05550_2.00 Known CisBP ACGAAACTGAAACTA Direct PWM Open · Scan
M09239_2.00 Known CisBP GAAAGCGAAACT Direct PWM Open · Scan
IRF9_HUMAN.H11MO.0.C Known HOCOMOCO GAAAGCGAAACT Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 393 aa
15-115

Region 15-115 0 PWM

Residues
101 aa
Domains
PF00605 · Interferon regulatory factor transcription factor
3D models
1 active PDB
Templates
1T2K
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 15-1151 model
Actions
Predicted = Low DIMER_Q00978:15:115_1t2k_A_1 1t2k 15-115 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
11-114PF00605Interferon regulatory factor transcription factoroverlaps 15-115
218-381PF10401Interferon-regulatory factor 3No overlap with loaded model regions