Region 370-452 0 PWM
- Residues
- 83 aa
- Domains
- PF02376 · CUT domain
- 3D models
- 4 active PDBs · 4 summary rows
- Templates
- 2D5V, 2O49, 2O4A, 6LFF
- Sources
- Predicted = Low
Transcription factor
Q01826 - SATB1
DNA-binding protein SATB1 (Special AT-rich sequence-binding protein 1)
Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 763 aa
Motif Prediction
Only entries with a generated matrix are shown here.
Known2
Nearest Neighbor (>70%)0
No generated PWM in this category.
Nearest Neighbor (70% - 40%)0
No generated PWM in this category.
ModCRE5
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| DIMER_sp_Q01826_SATB1_HUMAN:643:666_6v92_d_1 | ModCRE | Homology model | TGCCGCGCCGCGCGGTTCAAATGCGACCCGTGCAAAGCGTGACATGGGCTCTCAGGCTCTACGTAGGTCTTCTTGTGAGTTCGGTATTGTCGGGCTATTCCGACGGAAGCGCCCCCCC | Region 643-666 · 1 3D model | Open · Scan | |
| DIMER_sp_Q01826_SATB1_HUMAN:646:701_1hdd_D_1 | ModCRE | Homology model | CCCTCACACTGGGCCCA | Region 646-701 · 1 3D model | Open · Scan | |
| DIMER_sp_Q01826_SATB1_HUMAN:678:697_1jgg_B_1 | ModCRE | Homology model | TACTTGAGTG | Region 678-697 · 1 3D model | Open · Scan | |
| TFS_sp_Q01826_SATB1_HUMAN:494:570_2o49_A_1 | ModCRE | Homology model | GGCATAGCTAA | Region 494-570 · 1 3D model | Open · Scan | |
| TFS_sp_Q01826_SATB1_HUMAN:494:570_2o4a_A_1 | ModCRE | Homology model | TGCATAGCTAC | Region 494-570 · 1 3D model | Open · Scan |
Model-supported DNA-binding regions
Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.
1
763 aa
370-452
494-570
643-701
Region 494-570 2 PWM
- Residues
- 77 aa
- Domains
- PF02376 · CUT domain
- 3D models
- 2 active PDBs
- Templates
- 2O49, 2O4A
- Sources
- Predicted = Low
Region 643-701 3 PWM
- Residues
- 59 aa
- Domains
- PF00046 · Homeodomain
- 3D models
- 4 active PDBs · 4 summary rows
- Templates
- 1HDD, 1JGG, 6V92
- Sources
- Predicted = Low
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
10 active PDB models
8 summary rows
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
Region 370-4524 models · 4 summary rows
| Actions | ||||
|---|---|---|---|---|
| Predicted = Low | TFS_sp_Q01826_SATB1_HUMAN:370:452_2o49_A_1 | 2o49 | 370-452 | View model · PDB |
| Predicted = Low | TFS_sp_Q01826_SATB1_HUMAN:370:452_2o4a_A_1 | 2o4a | 370-452 | View model · PDB |
| Predicted = Low | TFS_sp_Q01826_SATB1_HUMAN:371:452_6lff_A_1 | 6lff | 371-452 | View model · PDB |
| Predicted = Low | TFS_sp_Q01826_SATB1_HUMAN:372:440_2d5v_A_1 | 2d5v | 372-440 | View model · PDB |
Model-summary evidence imported for this region.
| Rank | Template | Domain | N-tails | C-tails | Chains | Identity / similarity | Coverage | Model file |
|---|---|---|---|---|---|---|---|---|
| 1 | 2o4a | 370:452 | 370 | 452 | P:A · DNA:B,C | 100.0% / 100.0% | 98 | View · PDB TFS_sp_Q01826_SATB1_HUMAN:370:452_2o4a_A_1 |
| 2 | 2o49 | 370:452 | 370 | 452 | P:A · DNA:B,C | 100.0% / 100.0% | 98 | View · PDB TFS_sp_Q01826_SATB1_HUMAN:370:452_2o49_A_1 |
| 3 | 6lff | 370:452 | 371 | 452 | P:A · DNA:C,D | 100.0% / 100.0% | 100 | View · PDB TFS_sp_Q01826_SATB1_HUMAN:371:452_6lff_A_1 |
| 4 | 2d5v | 370:452 | 372 | 440 | P:A · DNA:C,D | 39.1% / 58.0% | 50 | View · PDB TFS_sp_Q01826_SATB1_HUMAN:372:440_2d5v_A_1 |
Region 494-5702 models
| Actions | ||||
|---|---|---|---|---|
| Predicted = Low | TFS_sp_Q01826_SATB1_HUMAN:494:570_2o49_A_1 | 2o49 | 494-570 | View model · PDB |
| Predicted = Low | TFS_sp_Q01826_SATB1_HUMAN:494:570_2o4a_A_1 | 2o4a | 494-570 | View model · PDB |
Region 643-7014 models · 4 summary rows
| Actions | ||||
|---|---|---|---|---|
| Predicted = Low | DIMER_sp_Q01826_SATB1_HUMAN:643:666_6v92_d_1 | 6v92 | 643-666 | View model · PDB |
| Predicted = Low | DIMER_sp_Q01826_SATB1_HUMAN:646:701_1hdd_D_1 | 1hdd | 646-701 | View model · PDB |
| Predicted = Low | DIMER_sp_Q01826_SATB1_HUMAN:678:697_1jgg_B_1 | 1jgg | 678-697 | View model · PDB |
| Predicted = Low | TFS_sp_Q01826_SATB1_HUMAN:646:701_1hdd_D_1 | 1hdd | 646-701 | View model · PDB |
Model-summary evidence imported for this region.
| Rank | Template | Domain | N-tails | C-tails | Chains | Identity / similarity | Coverage | Model file |
|---|---|---|---|---|---|---|---|---|
| 2 | 1jgg | 370:452 | 678,678 | 697,697 | P:A,B · DNA:C,D | 60.0% / 85.0% | 35,35 | View · PDB DIMER_sp_Q01826_SATB1_HUMAN:678:697_1jgg_B_1 |
| 3 | 6v92 | 370:452 | 643,643 | 666,666 | P:d,h · DNA:i,j | 41.7% / 70.8% | 25,25 | View · PDB DIMER_sp_Q01826_SATB1_HUMAN:643:666_6v92_d_1 |
| 1 | 1hdd | 370:452 | 646,646 | 701,701 | P:C,D · DNA:A,B | 37.5% / 51.8% | 96,96 | View · PDB DIMER_sp_Q01826_SATB1_HUMAN:646:701_1hdd_D_1 |
| 5 | 1hdd | 370:452 | 646,646 | 701,701 | P:C,D · DNA:A,B | 37.5% / 51.8% | 96,96 | View · PDB TFS_sp_Q01826_SATB1_HUMAN:646:701_1hdd_D_1 |
View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.
Domains
Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.
| Residues | PFAM | Domain | Used by prediction region? |
|---|---|---|---|
| 73-170 | PF16534 | Ubiquitin-like oligomerisation domain of SATB | No overlap with loaded model regions |
| 177-247 | PF16557 | CUT1-like DNA-binding domain of SATB | No overlap with loaded model regions |
| 371-445 | PF02376 | CUT domain | overlaps 370-452 |
| 494-567 | PF02376 | CUT domain | overlaps 494-570 |
| 646-698 | PF00046 | Homeodomain | overlaps 643-701 |