ModCRE DB

Transcription factor

Q01860 - POU5F1

POU domain, class 5, transcription factor 1 (Octamer-binding protein 3) (Oct-3) (Octamer-binding protein 4) (Oct-4) (Octamer-binding transcription factor 3) (OTF-3)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 360 aa

11 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known11
MotifPredictionSourceDNA bindingSupportLogoActions
MA1115.1 Known JASPAR ATATGCAAATT Direct PWM Open · Scan
MA1115.2 Known JASPAR ATGCAAA Direct PWM Open · Scan
M05501_2.00 Known CisBP AATTATGCTAATTAAG Direct PWM Open · Scan
M05502_2.00 Known CisBP TTATGCGCATAA Direct PWM Open · Scan
M05503_2.00 Known CisBP GATTATGCTAATGAGG Direct PWM Open · Scan
M05504_2.00 Known CisBP TTGCGCATAATTAAT Direct PWM Open · Scan
M05875_2.00 Known CisBP ATTATGCAAATT Direct PWM Open · Scan
M07976_2.00 Known CisBP TCCTTTGTTATGCAAAT Direct PWM Open · Scan
M08141_2.00 Known CisBP ATATGCAAATT Direct PWM Open · Scan
M09222_2.00 Known CisBP CCTTTGTTATGCAAAT Direct PWM Open · Scan
PO5F1_HUMAN.H11MO.0.A Known HOCOMOCO CCTTTGTTATGCAAAT Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 360 aa
138-287

Region 138-287 0 PWM

Residues
150 aa
Domains
PF00157 · Pou domain - N-terminal to homeobox domain PF00046 · Homeodomain
3D models
1 active PDB
Templates
3L1P
Sources
Structure model
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 138-2871 model
Actions
Predicted = Low DIMER_Q01860:138:287_3l1p_A_1 3l1p 138-287 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
143-212PF00157Pou domain - N-terminal to homeobox domainoverlaps 138-287
231-287PF00046Homeodomainoverlaps 138-287