ModCRE DB

Transcription factor

Q02548 - PAX5

Paired box protein Pax-5 (B-cell-specific transcription factor) (BSAP)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 391 aa

17 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known17
MotifPredictionSourceDNA bindingSupportLogoActions
MA0014.2 Known JASPAR GAGGGCAGCCAAGCGTGAC Direct PWM Open · Scan
MA0014.3 Known JASPAR GAGCGTGACCCC Direct PWM Open · Scan
MA0014.4 Known JASPAR GCGTGACC Direct PWM Open · Scan
M03443_2.00 Known CisBP GAGCACTCATGCGTGACG Direct PWM Open · Scan
M07995_2.00 Known CisBP GCAGCCAAGCGTGAC Direct PWM Open · Scan
M07996_2.00 Known CisBP GCAGCCAAGCGTGAC Direct PWM Open · Scan
M07997_2.00 Known CisBP CAGCCAAGCGTGACC Direct PWM Open · Scan
M07998_2.00 Known CisBP GCAGCCAAGCGTGAC Direct PWM Open · Scan
M08160_2.00 Known CisBP GAGCGTGACCCC Direct PWM Open · Scan
M08227_2.00 Known CisBP GCAGCCAAGCGTGAC Direct PWM Open · Scan
M08228_2.00 Known CisBP AGCGTGACCG Direct PWM Open · Scan
M09341_2.00 Known CisBP GCCTGGGCAGCAGAGCGTGAC Direct PWM Open · Scan
M09622_2.00 Known CisBP GCAGCCAAGCGTGACC Direct PWM Open · Scan
M09623_2.00 Known CisBP TCAGGGAGCGTGAC Direct PWM Open · Scan
M11208_2.00 Known CisBP TCGAGGCGCAATGATGCGTAGCCGCCCC Direct PWM Open · Scan
M11209_2.00 Known CisBP AAACAGATACCTGAAGCGTGACCATACA Direct PWM Open · Scan
PAX5_HUMAN.H11MO.0.A Known HOCOMOCO GCCTGGGCAGCAGAGCGTGAC Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 391 aa
229-263

Region 229-263 0 PWM

Residues
35 aa
Domains
No overlapping PFAM annotation recorded
3D models
1 active PDB
Templates
1FJL
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 229-2631 model
Actions
Predicted = Low DIMER_Q02548:229:263_1fjl_B_1 1fjl 229-263 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
16-140PF00292'Paired box' domainNo overlap with loaded model regions
283-390PF12403Paired-box protein 2 C terminalNo overlap with loaded model regions