ModCRE DB

Transcription factor

Q02962 - PAX2

Paired box protein Pax-2

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 417 aa

7 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known7
MotifPredictionSourceDNA bindingSupportLogoActions
M03294_2.00 Known CisBP CGTCACGCTTGACTGCTC Direct PWM Open · Scan
MA0067.2 Known JASPAR TCAGTGAAGCGTGACGA Direct PWM Open · Scan
MA0067.3 Known JASPAR TCAGTGAAGCGTGACG Direct PWM Open · Scan
M05428_2.00 Known CisBP CCGTCACGCATGACCGCCCA Direct PWM Open · Scan
M05429_2.00 Known CisBP TCGTCACGCATGACTGCACA Direct PWM Open · Scan
M10808_2.00 Known CisBP CCTCGTCACGCATGATGGA Direct PWM Open · Scan
M10809_2.00 Known CisBP GAGTTTATG Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 417 aa
255-281

Region 255-281 0 PWM

Residues
27 aa
Domains
No overlapping PFAM annotation recorded
3D models
1 active PDB
Templates
1FJL
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 255-2811 model
Actions
Predicted = Low DIMER_Q02962:255:281_1fjl_B_1 1fjl 255-281 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
16-140PF00292'Paired box' domainNo overlap with loaded model regions
308-416PF12403Paired-box protein 2 C terminalNo overlap with loaded model regions