ModCRE DB

Transcription factor

Q03923 - ZNF85

Zinc finger protein 85 (Zinc finger protein HPF4) (Zinc finger protein HTF1)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 595 aa

6 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known6
MotifPredictionSourceDNA bindingSupportLogoActions
M08295_2.00 Known CisBP CTGCTGGAATCTCCA Direct PWM Open · Scan
MA1720.1 Known JASPAR AAAGAGATTACAGCAG Direct PWM Open · Scan
MA1720.2 Known JASPAR GAGATTACAGCA Direct PWM Open · Scan
M07573_2.00 Known CisBP AAACTGCTGGAATCTCAG Direct PWM Open · Scan
M08872_2.00 Known CisBP ATAGAAAACTGAAGTAATCT Direct PWM Open · Scan
ZNF85_HUMAN.H11MO.0.C Known HOCOMOCO ATAGAAAACTGAAGTAATCT Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 595 aa
189-336

Region 189-336 0 PWM

Residues
148 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
1 active PDB
Templates
2I13
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 189-3361 model
Actions
Predicted = Low TFS_Q03923:189:336_2i13_A_1 2i13 189-336 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
3-44PF01352KRAB boxNo overlap with loaded model regions
174-196PF00096Zinc finger, C2H2 typeoverlaps 189-336
202-224PF00096Zinc finger, C2H2 typeoverlaps 189-336
230-252PF00096Zinc finger, C2H2 typeoverlaps 189-336
258-280PF00096Zinc finger, C2H2 typeoverlaps 189-336
286-308PF00096Zinc finger, C2H2 typeoverlaps 189-336
314-336PF00096Zinc finger, C2H2 typeoverlaps 189-336
342-364PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
370-392PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
398-420PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
426-448PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
454-476PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
482-504PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
510-532PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
538-560PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
566-588PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions