ModCRE DB

Transcription factor

Q04206 - RELA

Transcription factor p65 (Nuclear factor NF-kappa-B p65 subunit) (Nuclear factor of kappa light polypeptide gene enhancer in B-cells 3)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 551 aa

16 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known16
MotifPredictionSourceDNA bindingSupportLogoActions
MA0107.1 Known JASPAR GGGAATTTCC Direct PWM Open · Scan
M02711_2.00 Known CisBP GGGAATTTCC Direct PWM Open · Scan
M07999_2.00 Known CisBP AGGGGATTTCCCAG Direct PWM Open · Scan
M08000_2.00 Known CisBP AAGGGGATTTCCAA Direct PWM Open · Scan
M08001_2.00 Known CisBP TAGGGGATTTCCCAG Direct PWM Open · Scan
M08002_2.00 Known CisBP AGGGGATTTCCAAGG Direct PWM Open · Scan
M08003_2.00 Known CisBP AGGGGATTTCCAGG Direct PWM Open · Scan
M08004_2.00 Known CisBP AAGGGGATTTCCAAG Direct PWM Open · Scan
M08005_2.00 Known CisBP AAGGGGATTTCCAAA Direct PWM Open · Scan
M08006_2.00 Known CisBP GGGGATTTCCA Direct PWM Open · Scan
M08007_2.00 Known CisBP AGGGGATTTCCAA Direct PWM Open · Scan
M08008_2.00 Known CisBP AGGGGATTTCCAAGG Direct PWM Open · Scan
M09351_2.00 Known CisBP CAGGGAATTTCCAG Direct PWM Open · Scan
M09626_2.00 Known CisBP AGGGGATTTCCC Direct PWM Open · Scan
M11237_2.00 Known CisBP GGGAATTTCC Direct PWM Open · Scan
TF65_HUMAN.H11MO.0.A Known HOCOMOCO CAGGGAATTTCCAG Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 551 aa
19-291

Region 19-291 0 PWM

Residues
273 aa
Domains
PF00554 · Rel homology DNA-binding domain PF16179 · Rel homology dimerisation domain
3D models
1 active PDB
Templates
1RAM
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 19-2911 model
Actions
Predicted = Low DIMER_Q04206:19:291_1ram_B_1 1ram 19-291 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
21-186PF00554Rel homology DNA-binding domainoverlaps 19-291
195-291PF16179Rel homology dimerisation domainoverlaps 19-291