ModCRE DB

Transcription factor

Q06330 - RBPJ

Recombining binding protein suppressor of hairless (CBF-1) (J kappa-recombination signal-binding protein) (RBP-J kappa) (RBP-J) (RBP-JK) (Renal carcinoma antigen NY-REN-30)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 500 aa

13 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known13
MotifPredictionSourceDNA bindingSupportLogoActions
MA1116.1 Known JASPAR CCTGGGAAAG Direct PWM Open · Scan
MA1116.2 Known JASPAR TGGGAA Direct PWM Open · Scan
M00735_2.00 Known CisBP AGGTTCCCAC Direct PWM Open · Scan
M00736_2.00 Known CisBP AAGTTCCCAC Direct PWM Open · Scan
M00737_2.00 Known CisBP AGGTTCCCAC Direct PWM Open · Scan
M00738_2.00 Known CisBP GTTCCCAC Direct PWM Open · Scan
M00739_2.00 Known CisBP GGTTCCCAC Direct PWM Open · Scan
M00740_2.00 Known CisBP TGGTTCCCAC Direct PWM Open · Scan
M00741_2.00 Known CisBP AGGTTCCCAC Direct PWM Open · Scan
M00742_2.00 Known CisBP GGTTCCCAC Direct PWM Open · Scan
M08105_2.00 Known CisBP CTTTCCCAGG Direct PWM Open · Scan
M09020_2.00 Known CisBP TTTCCCACGCC Direct PWM Open · Scan
SUH_HUMAN.H11MO.0.A Known HOCOMOCO GGCGTGGGAAA Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 500 aa
25-448

Region 25-448 0 PWM

Residues
424 aa
Domains
PF09271 · LAG1, DNA binding PF09270 · Beta-trefoil DNA-binding domain PF20144 · TIG domain
3D models
1 active PDB
Templates
2F8X
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 25-4481 model
Actions
Predicted = Low TFS_Q06330:25:448_2f8x_C_1 2f8x 25-448 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
48-178PF09271LAG1, DNA bindingoverlaps 25-448
206-328PF09270Beta-trefoil DNA-binding domainoverlaps 25-448
354-444PF20144TIG domainoverlaps 25-448