ModCRE DB

Transcription factor

Q06416 - POU5F1B

POU domain, class 5, transcription factor 1B (Oct4-pg1) (Octamer-binding protein 3-like) (Octamer-binding transcription factor 3-like)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 359 aa

5 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known5
MotifPredictionSourceDNA bindingSupportLogoActions
MA0792.1 Known JASPAR TATGCAAAT Direct PWM Open · Scan
M01509_2.00 Known CisBP TAATTAT Direct PWM Open · Scan
M01510_2.00 Known CisBP ATAATTA Direct PWM Open · Scan
M03239_2.00 Known CisBP TATGCAAAT Direct PWM Open · Scan
M03240_2.00 Known CisBP TTGCATATTCAT Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 359 aa
138-286

Region 138-286 0 PWM

Residues
149 aa
Domains
PF00157 · Pou domain - N-terminal to homeobox domain PF00046 · Homeodomain
3D models
1 active PDB
Templates
3L1P
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 138-2861 model
Actions
Predicted = Low DIMER_Q06416:138:286_3l1p_A_1 3l1p 138-286 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
143-212PF00157Pou domain - N-terminal to homeobox domainoverlaps 138-286
231-286PF00046Homeodomainoverlaps 138-286