ModCRE DB

Transcription factor

Q06546 - GABPA

GA-binding protein alpha chain (GABP subunit alpha) (Nuclear respiratory factor 2 subunit alpha) (Transcription factor E4TF1-60)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 454 aa

15 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known15
MotifPredictionSourceDNA bindingSupportLogoActions
MA0062.1 Known JASPAR ACCGGAAGAG Direct PWM Open · Scan
MA0062.3 Known JASPAR CCCACTTCCTGTTT Direct PWM Open · Scan
MA0062.4 Known JASPAR CACTTCCTGT Direct PWM Open · Scan
M02996_2.00 Known CisBP ACCGGAAGTA Direct PWM Open · Scan
M04768_2.00 Known CisBP GACCGGAAGTG Direct PWM Open · Scan
M04769_2.00 Known CisBP AACCGGAAGTG Direct PWM Open · Scan
M05865_2.00 Known CisBP ACCGGAAGTAG Direct PWM Open · Scan
M07952_2.00 Known CisBP CGCCGGAAGTG Direct PWM Open · Scan
M07953_2.00 Known CisBP AACCGGAAGTG Direct PWM Open · Scan
M07954_2.00 Known CisBP GAACCGGAAGTGGC Direct PWM Open · Scan
M07955_2.00 Known CisBP CGGAACCGGAAGTGG Direct PWM Open · Scan
M07956_2.00 Known CisBP GGAACCGGAAGTG Direct PWM Open · Scan
M09056_2.00 Known CisBP GGAACCGGAAGTGG Direct PWM Open · Scan
M09535_2.00 Known CisBP AACCGGAAGT Direct PWM Open · Scan
GABPA_HUMAN.H11MO.0.A Known HOCOMOCO GGAACCGGAAGTGG Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 454 aa
317-418

Region 317-418 0 PWM

Residues
102 aa
Domains
PF00178 · Ets-domain
3D models
1 active PDB
Templates
2NNY
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 317-4181 model
Actions
Predicted = Low DIMER_Q06546:317:418_2nny_B_1 2nny 317-418 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
37-119PF11620GA-binding protein alpha chainNo overlap with loaded model regions
171-250PF02198Sterile alpha motif (SAM)/Pointed domainNo overlap with loaded model regions
319-400PF00178Ets-domainoverlaps 317-418