ModCRE DB

Transcription factor

Q06710 - PAX8

Paired box protein Pax-8

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 450 aa

24 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known2
MotifPredictionSourceDNA bindingSupportLogoActions
MA2094.1 Known JASPAR CGTCACGCATGACTGC Direct PWM Open · Scan
M05686_2.00 Known CisBP TGTTCGGTCAAGCGTGACCA Direct PWM Open · Scan
Nearest Neighbor (>70%)8
MotifPredictionSourceDNA bindingSupportLogoActions
M05685_2.00 NN 70+% CisBP GGCGCAGTCATGCGTGACGG 98.6% identity Open · Scan
MA0779.1 NN 70+% JASPAR CGTCACGCATGACTGCA 72.4% identity Open · Scan
M02426_2.00 NN 70+% CisBP ACCGTGACCAC 72.2% identity Open · Scan
MA0781.1 NN 70+% JASPAR CGTCACGCATGACTGCA 72.2% identity Open · Scan
M03945_2.00 NN 70+% CisBP GTCATGCGTGACG 70.8% identity Open · Scan
M03947_2.00 NN 70+% CisBP AGCGTGACGGTTCCGCT 70.1% identity Open · Scan
M05419_2.00 NN 70+% CisBP CGATTAGTCACGGTT 70.0% identity Open · Scan
MA0680.1 NN 70+% JASPAR TAATCGATTA 70.0% identity Open · Scan
Nearest Neighbor (70% - 40%)14
MotifPredictionSourceDNA bindingSupportLogoActions
M02690_2.00 NN 70-40% CisBP AGTCACGC 65.5% identity Open · Scan
M03892_2.00 NN 70-40% CisBP GATAATTGATTATC 64.0% identity Open · Scan
MA0068.1 NN 70-40% JASPAR GAAAAATTTCCAATACTCCACTCCCCCCCC 63.6% identity Open · Scan
M03888_2.00 NN 70-40% CisBP GCGTGACGAATC 62.4% identity Open · Scan
MA0068.2 NN 70-40% JASPAR CTAATTAG 61.8% identity Open · Scan
M03887_2.00 NN 70-40% CisBP GATAATCGATTATC 59.5% identity Open · Scan
M06555_2.00 NN 70-40% CisBP AGTAACAGT 59.3% identity Open · Scan
M02425_2.00 NN 70-40% CisBP CAGTCAAGCG 56.2% identity Open · Scan
M00349_2.00 NN 70-40% CisBP CTAATTAGC 55.0% identity Open · Scan
M03903_2.00 NN 70-40% CisBP ATAATTGATTAT 54.1% identity Open · Scan
MA0067.1 NN 70-40% JASPAR AGTCACGC 53.4% identity Open · Scan
M03294_2.00 NN 70-40% CisBP CGTCACGCTTGACTGCTC 53.1% identity Open · Scan
MA0014.1 NN 70-40% JASPAR AGAGCACTGAAGCGTAACCG 53.1% identity Open · Scan
MA0014.2 NN 70-40% JASPAR GAGGGCAGCCAAGCGTGAC 52.9% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 450 aa
228-249

Region 228-249 0 PWM

Residues
22 aa
Domains
No overlapping PFAM annotation recorded
3D models
1 active PDB
Templates
1FJL
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 228-2491 model
Actions
Predicted = Low DIMER_Q06710:228:249_1fjl_B_1 1fjl 228-249 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
9-133PF00292'Paired box' domainNo overlap with loaded model regions
339-449PF12403Paired-box protein 2 C terminalNo overlap with loaded model regions