Transcription factor

Q06945 - SOX4

Transcription factor SOX-4

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 474 aa

9 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known9

Motif	Prediction	Source	DNA binding	Support	Actions
MA0867.1	Known	JASPAR	GAACAATTGCAGTGTT	Direct PWM	Open · Scan
MA0867.2	Known	JASPAR	GAACAAAGGG	Direct PWM	Open · Scan
MA0867.3	Known	JASPAR	AACAAAGG	Direct PWM	Open · Scan
M01026_2.00	Known	CisBP	AACAAAGG	Direct PWM	Open · Scan
M03496_2.00	Known	CisBP	GAACAATTGCAGTGTT	Direct PWM	Open · Scan
M05765_2.00	Known	CisBP	GAACAAAGGG	Direct PWM	Open · Scan
M05766_2.00	Known	CisBP	GAACAAAGGA	Direct PWM	Open · Scan
M09388_2.00	Known	CisBP	TCCTTTGTTCTC	Direct PWM	Open · Scan
SOX4_HUMAN.H11MO.0.B	Known	HOCOMOCO	TCCTTTGTTCTC	Direct PWM	Open · Scan

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 474 aa

57-132

Scan this region Show models

3D Models

Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.

1 active PDB model

Region 57-1321 model

				Actions
Predicted = Low	TFS_Q06945:57:132_3u2b_C_1	3u2b	57-132	View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

Residues	PFAM	Domain	Used by prediction region?
59-127	PF00505	HMG (high mobility group) box	overlaps 57-132