ModCRE DB

Transcription factor

Q08AG5 - ZNF844

Zinc finger protein 844

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 666 aa

43 Generated PWM 10 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)38
MotifPredictionSourceDNA bindingSupportLogoActions
M07628_2.00 NN 70-40% CisBP AGTGGTTCTGCTTCT 68.5% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 65.4% identity Open · Scan
M07627_2.00 NN 70-40% CisBP CAGTCACCTTCTGG 64.3% identity Open · Scan
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 62.9% identity Open · Scan
M07659_2.00 NN 70-40% CisBP GTCTTCCAAGTAGCTGGTGTT 60.8% identity Open · Scan
M07733_2.00 NN 70-40% CisBP TCTTTCTCTCTCTCC 60.8% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 60.7% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 60.7% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 60.7% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 59.5% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 59.5% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 59.5% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 59.5% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 58.3% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 58.3% identity Open · Scan
M07770_2.00 NN 70-40% CisBP CTTGGACTT 56.5% identity Open · Scan
M08908_2.00 NN 70-40% CisBP GCTGCTGCTTCTGCTG 56.0% identity Open · Scan
M07731_2.00 NN 70-40% CisBP TTTCCCAGCAGCAACAGCACCGCCCCCCCC 55.0% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 54.1% identity Open · Scan
MA1588.1 NN 70-40% JASPAR GAATTCTTGGTTGAC 54.0% identity Open · Scan
M06179_2.00 NN 70-40% CisBP TAAGCCTATAGA 53.7% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 53.4% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 53.4% identity Open · Scan
M08367_2.00 NN 70-40% CisBP GGGGTGATGACCACTCTGGCTTCTTAC 53.4% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 53.1% identity Open · Scan
M08366_2.00 NN 70-40% CisBP GTTTGCTGCTTACAA 52.4% identity Open · Scan
M08917_2.00 NN 70-40% CisBP GCTGAGCCATGTGGGGTGCT 52.4% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 52.3% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 51.9% identity Open · Scan
M05844_2.00 NN 70-40% CisBP TCACCTGT 51.5% identity Open · Scan
MA0103.1 NN 70-40% JASPAR CACCTG 51.5% identity Open · Scan
MA0103.2 NN 70-40% JASPAR CCTCACCTG 51.5% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 51.3% identity Open · Scan
M07702_2.00 NN 70-40% CisBP CTTCTTCCTTGG 50.8% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 50.7% identity Open · Scan
M00135_2.00 NN 70-40% CisBP AGCCCCCCAA 50.0% identity Open · Scan
M00645_2.00 NN 70-40% CisBP CGCCCACGCA 50.0% identity Open · Scan
MA0694.1 NN 70-40% JASPAR GCGACCACCGAA 50.0% identity Open · Scan
ModCRE5
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_sp_Q08AG5_ZN844_HUMAN:223:272_1llm_D_1 ModCRE Homology model TTCGCGCGCGGA Region 223-272 · 1 3D model Open · Scan
TFS_sp_Q08AG5_ZN844_HUMAN:197:306_6e93_A_1 ModCRE Homology model TGAGCGGCTGCAGAATTC Region 197-306 · 1 3D model Open · Scan
TFS_sp_Q08AG5_ZN844_HUMAN:197:306_6e94_A_1 ModCRE Homology model TGATCCGCGACGGATATC Region 197-306 · 1 3D model Open · Scan
TFS_sp_Q08AG5_ZN844_HUMAN:222:332_5egb_A_1 ModCRE Homology model CGCGCGCCACCAGTTGGC Region 222-332 · 1 3D model Open · Scan
TFS_sp_Q08AG5_ZN844_HUMAN:224:332_5eh2_F_1 ModCRE Homology model GGAGGGTTACCCGGGACAA Region 224-332 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 666 aa
137-371

Region 137-371 5 PWM

Residues
235 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
10 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5EGB, 5EH2, 5EI9, 5V3J, 5V3M, 5WJQ, ...
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
10 active PDB models 6 summary rows
Region 137-37110 models · 6 summary rows
Actions
Predicted = Low DIMER_sp_Q08AG5_ZN844_HUMAN:223:272_1llm_D_1 1llm 223-272 View model · PDB
Predicted = Low TFS_sp_Q08AG5_ZN844_HUMAN:137:371_5v3j_E_1 5v3j 137-371 View model · PDB
Predicted = Low TFS_sp_Q08AG5_ZN844_HUMAN:137:371_5v3m_C_1 5v3m 137-371 View model · PDB
Predicted = Low TFS_sp_Q08AG5_ZN844_HUMAN:138:371_5wjq_D_1 5wjq 138-371 View model · PDB
Predicted = Low TFS_sp_Q08AG5_ZN844_HUMAN:160:303_2i13_A_1 2i13 160-303 View model · PDB
Predicted = Low TFS_sp_Q08AG5_ZN844_HUMAN:197:306_6e93_A_1 6e93 197-306 View model · PDB
Predicted = Low TFS_sp_Q08AG5_ZN844_HUMAN:197:306_6e94_A_1 6e94 197-306 View model · PDB
Predicted = Low TFS_sp_Q08AG5_ZN844_HUMAN:222:332_5egb_A_1 5egb 222-332 View model · PDB
Predicted = Low TFS_sp_Q08AG5_ZN844_HUMAN:222:332_5ei9_E_1 5ei9 222-332 View model · PDB
Predicted = Low TFS_sp_Q08AG5_ZN844_HUMAN:224:332_5eh2_F_1 5eh2 224-332 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
5 5ei9 137:371 222 332 P:E · DNA:A,B 52.3% / 70.3% 100 View · PDB TFS_sp_Q08AG5_ZN844_HUMAN:222:332_5ei9_E_1
4 2i13 137:371 160 303 P:A · DNA:C,D 49.3% / 66.0% 93 View · PDB TFS_sp_Q08AG5_ZN844_HUMAN:160:303_2i13_A_1
1 1llm 137:371 223,223 272,272 P:C,D · DNA:A,B 46.0% / 60.0% 57,58 View · PDB DIMER_sp_Q08AG5_ZN844_HUMAN:223:272_1llm_D_1
2 5v3m 137:371 137 371 P:C · DNA:A,B 43.2% / 62.7% 84 View · PDB TFS_sp_Q08AG5_ZN844_HUMAN:137:371_5v3m_C_1
3 5v3j 137:371 137 371 P:E · DNA:A,B 43.2% / 62.7% 84 View · PDB TFS_sp_Q08AG5_ZN844_HUMAN:137:371_5v3j_E_1
1 5wjq 137:371 138 371 P:D · DNA:A,B 43.0% / 62.6% 83 View · PDB TFS_sp_Q08AG5_ZN844_HUMAN:138:371_5wjq_D_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
3-44PF01352KRAB boxNo overlap with loaded model regions
169-191PF00096Zinc finger, C2H2 typeoverlaps 137-371
225-247PF00096Zinc finger, C2H2 typeoverlaps 137-371
253-275PF00096Zinc finger, C2H2 typeoverlaps 137-371