ModCRE DB

Transcription factor

Q08ER8 - ZNF543

Zinc finger protein 543

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 600 aa

2 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known2
MotifPredictionSourceDNA bindingSupportLogoActions
M08347_2.00 Known CisBP GCCCTGGGCAGC Direct PWM Open · Scan
M07652_2.00 Known CisBP GGCCCCCTCCCC Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 600 aa
227-385

Region 227-385 0 PWM

Residues
159 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
1 active PDB
Templates
5T0U
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 227-3851 model
Actions
Predicted = Low TFS_Q08ER8:227:385_5t0u_A_1 5t0u 227-385 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
8-49PF01352KRAB boxNo overlap with loaded model regions
199-221PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
227-249PF00096Zinc finger, C2H2 typeoverlaps 227-385
255-277PF00096Zinc finger, C2H2 typeoverlaps 227-385
283-305PF00096Zinc finger, C2H2 typeoverlaps 227-385
311-333PF00096Zinc finger, C2H2 typeoverlaps 227-385
339-361PF00096Zinc finger, C2H2 typeoverlaps 227-385
367-389PF00096Zinc finger, C2H2 typeoverlaps 227-385
395-417PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
423-445PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
451-473PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
479-501PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
507-529PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
535-557PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions