ModCRE DB

Transcription factor

Q12777 - PAX-3

PAX-3 protein

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 332 aa

104 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)20
MotifPredictionSourceDNA bindingSupportLogoActions
MA0780.1 NN 70+% JASPAR TAATCGATTA 99.0% identity Open · Scan
M00354_2.00 NN 70+% CisBP CCGATTA 98.7% identity Open · Scan
M06555_2.00 NN 70+% CisBP AGTAACAGT 78.3% identity Open · Scan
MA0681.1 NN 70+% JASPAR TAATTTAATTA 76.1% identity Open · Scan
MA0713.1 NN 70+% JASPAR TAATTTAATTA 76.1% identity Open · Scan
M06322_2.00 NN 70+% CisBP TTAATTA 73.4% identity Open · Scan
MA1481.1 NN 70+% JASPAR CTAATTAC 73.0% identity Open · Scan
M03076_2.00 NN 70+% CisBP TTAATTAAATTAA 72.9% identity Open · Scan
MA0874.1 NN 70+% JASPAR GTCCATTAATTAATGGA 72.9% identity Open · Scan
M03278_2.00 NN 70+% CisBP TTAATTTAATTAT 72.1% identity Open · Scan
M04917_2.00 NN 70+% CisBP GTAATTAG 72.1% identity Open · Scan
M10741_2.00 NN 70+% CisBP AACTAATTACCATTATCG 72.1% identity Open · Scan
MA0853.1 NN 70+% JASPAR CGCATTAATTAATTACC 72.1% identity Open · Scan
MA0854.1 NN 70+% JASPAR CGAATTAATTAATCACC 72.1% identity Open · Scan
M06326_2.00 NN 70+% CisBP TTAATT 71.4% identity Open · Scan
M06370_2.00 NN 70+% CisBP TTAATTA 71.1% identity Open · Scan
MA0680.1 NN 70+% JASPAR TAATCGATTA 70.8% identity Open · Scan
M05367_2.00 NN 70+% CisBP TTAATTAG 70.4% identity Open · Scan
M05419_2.00 NN 70+% CisBP CGATTAGTCACGGTT 70.4% identity Open · Scan
MA0630.1 NN 70+% JASPAR TTAATTGG 70.4% identity Open · Scan
Nearest Neighbor (70% - 40%)84
MotifPredictionSourceDNA bindingSupportLogoActions
M00402_2.00 NN 70-40% CisBP TAATTAG 69.8% identity Open · Scan
MA0634.1 NN 70-40% JASPAR TCTAATTAAA 69.8% identity Open · Scan
M03121_2.00 NN 70-40% CisBP TTAATTGG 69.3% identity Open · Scan
MA0716.1 NN 70-40% JASPAR CTAATTAA 69.3% identity Open · Scan
M05245_2.00 NN 70-40% CisBP GTAATTAG 68.9% identity Open · Scan
M03204_2.00 NN 70-40% CisBP TTAATTGG 68.6% identity Open · Scan
MA0720.1 NN 70-40% JASPAR CTAATTAA 68.6% identity Open · Scan
MA0075.1 NN 70-40% JASPAR AATTA 67.7% identity Open · Scan
MA0075.3 NN 70-40% JASPAR CTAATTAA 67.7% identity Open · Scan
M03855_2.00 NN 70-40% CisBP TAATTAGATTA 67.1% identity Open · Scan
M03828_2.00 NN 70-40% CisBP GTTAATTAACGTTAATTAAC 66.6% identity Open · Scan
MA0718.1 NN 70-40% JASPAR GCCAATTAAC 66.6% identity Open · Scan
M00426_2.00 NN 70-40% CisBP GCTAATTGG 66.1% identity Open · Scan
M03236_2.00 NN 70-40% CisBP GTTAATCCGC 66.1% identity Open · Scan
MA0883.1 NN 70-40% JASPAR TGAACCGGATTAATGAA 66.1% identity Open · Scan
M06291_2.00 NN 70-40% CisBP TTAATTA 65.6% identity Open · Scan
M00417_2.00 NN 70-40% CisBP GCTAATTA 65.5% identity Open · Scan
M02231_2.00 NN 70-40% CisBP TTAATTGG 65.2% identity Open · Scan
MA0717.1 NN 70-40% JASPAR CCAATTAA 65.0% identity Open · Scan
M09208_2.00 NN 70-40% CisBP CCTAATCCTCTTA 64.5% identity Open · Scan
MA0467.1 NN 70-40% JASPAR AAGAGGATTAG 64.5% identity Open · Scan
M09210_2.00 NN 70-40% CisBP TAATTGAATTA 64.4% identity Open · Scan
M02111_2.00 NN 70-40% CisBP GTTAATTAG 63.9% identity Open · Scan
MA0721.1 NN 70-40% JASPAR CTAATTAA 63.9% identity Open · Scan
M10806_2.00 NN 70-40% CisBP AATTTTCACGCATGAGTTCAC 63.6% identity Open · Scan
MA0069.1 NN 70-40% JASPAR TTCACGCATGAGTT 63.6% identity Open · Scan
M02079_2.00 NN 70-40% CisBP AATTAATTAGT 63.4% identity Open · Scan
M06310_2.00 NN 70-40% CisBP TTAATTA 63.4% identity Open · Scan
MA0726.1 NN 70-40% JASPAR CTAATTAG 63.4% identity Open · Scan
M02123_2.00 NN 70-40% CisBP TTAATCCCT 62.9% identity Open · Scan
M09569_2.00 NN 70-40% CisBP GTTAATCCCT 62.5% identity Open · Scan
M00440_2.00 NN 70-40% CisBP TTAATCCC 61.9% identity Open · Scan
M03903_2.00 NN 70-40% CisBP ATAATTGATTAT 61.9% identity Open · Scan
MA1547.1 NN 70-40% JASPAR ATAATCCC 61.9% identity Open · Scan
M02097_2.00 NN 70-40% CisBP AATTAATTAG 61.8% identity Open · Scan
M06523_2.00 NN 70-40% CisBP TTAATTG 61.7% identity Open · Scan
M03887_2.00 NN 70-40% CisBP GATAATCGATTATC 61.5% identity Open · Scan
M03250_2.00 NN 70-40% CisBP TTAATCCG 61.2% identity Open · Scan
M09681_2.00 NN 70-40% CisBP CTAATCCG 61.2% identity Open · Scan
MA0711.1 NN 70-40% JASPAR TTAATCCG 61.2% identity Open · Scan
MA0714.1 NN 70-40% JASPAR CTTAATCCC 60.8% identity Open · Scan
M03896_2.00 NN 70-40% CisBP CTAATTAG 60.6% identity Open · Scan
MA0654.1 NN 70-40% JASPAR CTAATTAA 60.3% identity Open · Scan
M03776_2.00 NN 70-40% CisBP TAATTGAATTA 60.2% identity Open · Scan
M02082_2.00 NN 70-40% CisBP ATTGTACAAT 59.7% identity Open · Scan
M00452_2.00 NN 70-40% CisBP GCTAATTG 59.1% identity Open · Scan
M01241_2.00 NN 70-40% CisBP TTAATCCC 59.0% identity Open · Scan
M03876_2.00 NN 70-40% CisBP TAATTAAATTA 58.6% identity Open · Scan
M03819_2.00 NN 70-40% CisBP TAATCCGTTAATCCG 58.4% identity Open · Scan
M09153_2.00 NN 70-40% CisBP GTTAATCCCCT 58.2% identity Open · Scan
MA0712.1 NN 70-40% JASPAR TTAATCCT 58.2% identity Open · Scan
M06318_2.00 NN 70-40% CisBP TTAATTA 58.0% identity Open · Scan
MA0648.1 NN 70-40% JASPAR GCTAATCCCC 58.0% identity Open · Scan
M02143_2.00 NN 70-40% CisBP TTAATTGG 57.8% identity Open · Scan
M03888_2.00 NN 70-40% CisBP GCGTGACGAATC 57.5% identity Open · Scan
M00428_2.00 NN 70-40% CisBP TTAATCCC 56.7% identity Open · Scan
M06539_2.00 NN 70-40% CisBP CTAATTA 56.6% identity Open · Scan
MA0644.1 NN 70-40% JASPAR ACCAATTAAC 56.6% identity Open · Scan
M06552_2.00 NN 70-40% CisBP TTAATTA 56.4% identity Open · Scan
M02209_2.00 NN 70-40% CisBP AGCGGATATA 56.3% identity Open · Scan
MA0715.1 NN 70-40% JASPAR TAATTTAATTA 55.2% identity Open · Scan
MA0621.1 NN 70-40% JASPAR AATTAATTAGT 55.0% identity Open · Scan
M02078_2.00 NN 70-40% CisBP AATTAATTAGT 54.9% identity Open · Scan
M02162_2.00 NN 70-40% CisBP TTAATTAG 54.5% identity Open · Scan
M04941_2.00 NN 70-40% CisBP CTAATTAC 54.5% identity Open · Scan
MA0725.1 NN 70-40% JASPAR CTAATTAT 54.4% identity Open · Scan
M02195_2.00 NN 70-40% CisBP CCTAATCCGC 54.3% identity Open · Scan
M03892_2.00 NN 70-40% CisBP GATAATTGATTATC 53.9% identity Open · Scan
M04929_2.00 NN 70-40% CisBP CTAATCCG 53.6% identity Open · Scan
MA0682.1 NN 70-40% JASPAR TTAATCCC 53.6% identity Open · Scan
MA0682.2 NN 70-40% JASPAR CTAATCCC 53.6% identity Open · Scan
M00674_2.00 NN 70-40% CisBP TTAATCCC 53.2% identity Open · Scan
M00679_2.00 NN 70-40% CisBP TTAATCCC 53.2% identity Open · Scan
MA0710.1 NN 70-40% JASPAR GCTAATTAGC 53.2% identity Open · Scan
M03851_2.00 NN 70-40% CisBP CTAATTGA 53.0% identity Open · Scan
M02103_2.00 NN 70-40% CisBP AGGTGTAAA 52.6% identity Open · Scan
MA0891.1 NN 70-40% JASPAR CCTAATCCGC 51.9% identity Open · Scan
M00349_2.00 NN 70-40% CisBP CTAATTAGC 51.7% identity Open · Scan
M03814_2.00 NN 70-40% CisBP GTAATGGC 51.7% identity Open · Scan
MA0068.1 NN 70-40% JASPAR GAAAAATTTCCAATACTCCACTCCCCCCCC 51.7% identity Open · Scan
MA0068.2 NN 70-40% JASPAR CTAATTAG 51.7% identity Open · Scan
MA0884.1 NN 70-40% JASPAR CTAATTTAATCAA 51.7% identity Open · Scan
MA0719.1 NN 70-40% JASPAR ATAATCCC 50.7% identity Open · Scan
M00424_2.00 NN 70-40% CisBP ACTAATTA 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 332 aa
70-130

Region 70-130 0 PWM

Residues
61 aa
Domains
PF00046 · Homeodomain
3D models
1 active PDB
Templates
1FJL
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 70-1301 model
Actions
Predicted = Low DIMER_Q12777:70:130_1fjl_A_1 1fjl 70-130 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
72-129PF00046Homeodomainoverlaps 70-130
200-244PF12360Paired box protein 7No overlap with loaded model regions