ModCRE DB

Transcription factor

Q12946 - FOXF1

Forkhead box protein F1 (Forkhead-related activator 1) (FREAC-1) (Forkhead-related protein FKHL5) (Forkhead-related transcription factor 1)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 379 aa

58 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known1
MotifPredictionSourceDNA bindingSupportLogoActions
M10530_2.00 Known CisBP CATATAAACAATG Direct PWM Open · Scan
Nearest Neighbor (>70%)1
MotifPredictionSourceDNA bindingSupportLogoActions
MA1606.1 NN 70+% JASPAR ATGTAAACAAA 93.6% identity Open · Scan
Nearest Neighbor (70% - 40%)56
MotifPredictionSourceDNA bindingSupportLogoActions
M03034_2.00 NN 70-40% CisBP GTAAACA 65.1% identity Open · Scan
M01982_2.00 NN 70-40% CisBP TATGTAAACA 65.0% identity Open · Scan
MA0032.1 NN 70-40% JASPAR GGTAAGTA 65.0% identity Open · Scan
MA0846.1 NN 70-40% JASPAR TAAGTAAACAAA 65.0% identity Open · Scan
M00164_2.00 NN 70-40% CisBP AATGTAAACA 64.9% identity Open · Scan
MA0033.1 NN 70-40% JASPAR TATACATA 63.9% identity Open · Scan
M09093_2.00 NN 70-40% CisBP AAATAAACAATA 63.2% identity Open · Scan
MA0040.1 NN 70-40% JASPAR TATTGTTTATT 63.2% identity Open · Scan
M10570_2.00 NN 70-40% CisBP CTTAAGTAAACAATGG 63.0% identity Open · Scan
M04827_2.00 NN 70-40% CisBP GTAATGTAAACAA 62.5% identity Open · Scan
M04848_2.00 NN 70-40% CisBP AACGTCAACAC 62.5% identity Open · Scan
MA1607.1 NN 70-40% JASPAR AATATGTAAACAAA 62.5% identity Open · Scan
MA0041.1 NN 70-40% JASPAR GAATGTTTGTTT 61.6% identity Open · Scan
M01987_2.00 NN 70-40% CisBP GTAAACAAA 61.5% identity Open · Scan
M03046_2.00 NN 70-40% CisBP GTAAACAA 61.5% identity Open · Scan
MA0851.1 NN 70-40% JASPAR AAAAAGTAAACAAACAC 61.5% identity Open · Scan
MA0847.1 NN 70-40% JASPAR GTAAACA 61.3% identity Open · Scan
M10565_2.00 NN 70-40% CisBP AAACAAACAATC 60.7% identity Open · Scan
M03058_2.00 NN 70-40% CisBP GTAAACATAAACA 60.5% identity Open · Scan
MA0042.1 NN 70-40% JASPAR GGATGTTTGTTT 60.2% identity Open · Scan
M10571_2.00 NN 70-40% CisBP AAAAATAAATATAAGG 60.0% identity Open · Scan
M03741_2.00 NN 70-40% CisBP TTATGTAAACAAT 59.5% identity Open · Scan
M01990_2.00 NN 70-40% CisBP TTGTTTACA 58.0% identity Open · Scan
M09669_2.00 NN 70-40% CisBP ATGTAAACACACC 58.0% identity Open · Scan
M01016_2.00 NN 70-40% CisBP TGGACGCTAA 57.5% identity Open · Scan
M01983_2.00 NN 70-40% CisBP TGTTTACATA 57.5% identity Open · Scan
MA0845.1 NN 70-40% JASPAR TATGTAAATAT 57.5% identity Open · Scan
MA1487.1 NN 70-40% JASPAR CCTTAAATAAACAAT 57.4% identity Open · Scan
M00664_2.00 NN 70-40% CisBP ATAAACAA 57.3% identity Open · Scan
MA0030.1 NN 70-40% JASPAR CAAACGTAAACAAT 56.9% identity Open · Scan
MA0047.2 NN 70-40% JASPAR TGTTTACTTAGG 56.8% identity Open · Scan
MA0047.3 NN 70-40% JASPAR ATGTAAACATA 56.8% identity Open · Scan
M00791_2.00 NN 70-40% CisBP ATGTAAACAA 56.7% identity Open · Scan
MA0613.1 NN 70-40% JASPAR GTAAACAA 56.7% identity Open · Scan
M00665_2.00 NN 70-40% CisBP ATGTAAACAAA 56.5% identity Open · Scan
M03743_2.00 NN 70-40% CisBP TATGTAAATATTTACATA 56.5% identity Open · Scan
M01227_2.00 NN 70-40% CisBP GTAAACAA 56.2% identity Open · Scan
MA1489.1 NN 70-40% JASPAR GTAAACAA 56.2% identity Open · Scan
MA0047.1 NN 70-40% JASPAR CAATATTTACTT 55.8% identity Open · Scan
MA1103.1 NN 70-40% JASPAR ATGTAAACAAG 55.6% identity Open · Scan
MA0148.1 NN 70-40% JASPAR TGTTTACTTTG 54.9% identity Open · Scan
M10528_2.00 NN 70-40% CisBP ATAATAATATTTTT 54.5% identity Open · Scan
MA0614.1 NN 70-40% JASPAR GTAAACAA 54.5% identity Open · Scan
MA0031.1 NN 70-40% JASPAR GTAAACAT 54.4% identity Open · Scan
M01003_2.00 NN 70-40% CisBP GTAAACAA 54.2% identity Open · Scan
M04835_2.00 NN 70-40% CisBP ACGCGTCGTTACGACGCGT 53.7% identity Open · Scan
MA0852.1 NN 70-40% JASPAR AAAATGTAAACAAACAG 53.7% identity Open · Scan
M03735_2.00 NN 70-40% CisBP AAACAATAATATT 53.2% identity Open · Scan
MA1683.1 NN 70-40% JASPAR ATGTAAACATA 53.2% identity Open · Scan
MA0852.2 NN 70-40% JASPAR AATGTAAACAAGGC 52.6% identity Open · Scan
M01974_2.00 NN 70-40% CisBP GTAAACAA 52.5% identity Open · Scan
M01002_2.00 NN 70-40% CisBP TAAACAA 51.8% identity Open · Scan
MA0479.1 NN 70-40% JASPAR TCCAATCCACA 51.2% identity Open · Scan
M03745_2.00 NN 70-40% CisBP ATGTAAACAAA 50.6% identity Open · Scan
M01011_2.00 NN 70-40% CisBP AAGGACGCGA 50.0% identity Open · Scan
M09104_2.00 NN 70-40% CisBP CCTTGTTTACTTT 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 379 aa
47-128

Region 47-128 0 PWM

Residues
82 aa
Domains
PF00250 · Forkhead domain
3D models
1 active PDB
Templates
3G73
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 47-1281 model
Actions
Predicted = Low DIMER_Q12946:47:128_3g73_B_1 3g73 47-128 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
47-132PF00250Forkhead domainoverlaps 47-128