ModCRE DB

Transcription factor

Q12948 - FOXC1

Forkhead box protein C1 (Forkhead-related protein FKHL7) (Forkhead-related transcription factor 3) (FREAC-3)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 553 aa

15 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known15
MotifPredictionSourceDNA bindingSupportLogoActions
MA0032.1 Known JASPAR GGTAAGTA Direct PWM Open · Scan
MA0032.2 Known JASPAR TATGTAAATAT Direct PWM Open · Scan
M00253_2.00 Known CisBP TGTATAAACAA Direct PWM Open · Scan
M00254_2.00 Known CisBP AATAAACAAC Direct PWM Open · Scan
M00255_2.00 Known CisBP AATATATTATGC Direct PWM Open · Scan
M00256_2.00 Known CisBP GAAAAATCACATT Direct PWM Open · Scan
M00257_2.00 Known CisBP TATATAAACA Direct PWM Open · Scan
M00258_2.00 Known CisBP CATAAAACAAG Direct PWM Open · Scan
M00259_2.00 Known CisBP ATAAACAA Direct PWM Open · Scan
M03013_2.00 Known CisBP AAGTAAATAAACA Direct PWM Open · Scan
M03014_2.00 Known CisBP TGTCAATATTTACA Direct PWM Open · Scan
M03015_2.00 Known CisBP TATGTAAATAT Direct PWM Open · Scan
M09083_2.00 Known CisBP CTTAAGTAAACAACG Direct PWM Open · Scan
M10526_2.00 Known CisBP TGTTTATTTACTTACC Direct PWM Open · Scan
FOXC1_HUMAN.H11MO.0.C Known HOCOMOCO CATTGTTTACTTAAG Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 553 aa
76-159

Region 76-159 0 PWM

Residues
84 aa
Domains
PF00250 · Forkhead domain
3D models
1 active PDB
Templates
2A07
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 76-1591 model
Actions
Predicted = Low DIMER_Q12948:76:159_2a07_K_1 2a07 76-159 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
78-163PF00250Forkhead domainoverlaps 76-159