ModCRE DB

Transcription factor

Q12950 - FOXD4

Forkhead box protein D4 (Forkhead-related protein FKHL9) (Forkhead-related transcription factor 5) (FREAC-5) (Myeloid factor-alpha)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 439 aa

51 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)7
MotifPredictionSourceDNA bindingSupportLogoActions
M10565_2.00 NN 70+% CisBP AAACAAACAATC 89.1% identity Open · Scan
M10570_2.00 NN 70+% CisBP CTTAAGTAAACAATGG 88.8% identity Open · Scan
MA0031.1 NN 70+% JASPAR GTAAACAT 88.8% identity Open · Scan
MA0041.1 NN 70+% JASPAR GAATGTTTGTTT 88.8% identity Open · Scan
MA0847.1 NN 70+% JASPAR GTAAACA 84.3% identity Open · Scan
M03741_2.00 NN 70+% CisBP TTATGTAAACAAT 82.8% identity Open · Scan
MA1487.1 NN 70+% JASPAR CCTTAAATAAACAAT 70.5% identity Open · Scan
Nearest Neighbor (70% - 40%)44
MotifPredictionSourceDNA bindingSupportLogoActions
M01982_2.00 NN 70-40% CisBP TATGTAAACA 67.6% identity Open · Scan
MA0032.1 NN 70-40% JASPAR GGTAAGTA 67.6% identity Open · Scan
MA0846.1 NN 70-40% JASPAR TAAGTAAACAAA 67.6% identity Open · Scan
M00791_2.00 NN 70-40% CisBP ATGTAAACAA 66.6% identity Open · Scan
MA0613.1 NN 70-40% JASPAR GTAAACAA 66.6% identity Open · Scan
M01983_2.00 NN 70-40% CisBP TGTTTACATA 66.3% identity Open · Scan
MA0845.1 NN 70-40% JASPAR TATGTAAATAT 66.3% identity Open · Scan
M01990_2.00 NN 70-40% CisBP TTGTTTACA 65.8% identity Open · Scan
M03743_2.00 NN 70-40% CisBP TATGTAAATATTTACATA 65.3% identity Open · Scan
M09104_2.00 NN 70-40% CisBP CCTTGTTTACTTT 64.8% identity Open · Scan
M10571_2.00 NN 70-40% CisBP AAAAATAAATATAAGG 64.6% identity Open · Scan
MA0148.1 NN 70-40% JASPAR TGTTTACTTTG 64.6% identity Open · Scan
MA1683.1 NN 70-40% JASPAR ATGTAAACATA 64.6% identity Open · Scan
M00164_2.00 NN 70-40% CisBP AATGTAAACA 64.2% identity Open · Scan
M03034_2.00 NN 70-40% CisBP GTAAACA 64.1% identity Open · Scan
M03735_2.00 NN 70-40% CisBP AAACAATAATATT 63.6% identity Open · Scan
MA0047.2 NN 70-40% JASPAR TGTTTACTTAGG 63.6% identity Open · Scan
MA0047.3 NN 70-40% JASPAR ATGTAAACATA 63.6% identity Open · Scan
MA0047.1 NN 70-40% JASPAR CAATATTTACTT 62.6% identity Open · Scan
MA0042.1 NN 70-40% JASPAR GGATGTTTGTTT 62.5% identity Open · Scan
M09669_2.00 NN 70-40% CisBP ATGTAAACACACC 61.1% identity Open · Scan
MA1606.1 NN 70-40% JASPAR ATGTAAACAAA 61.1% identity Open · Scan
MA0033.1 NN 70-40% JASPAR TATACATA 60.6% identity Open · Scan
M03058_2.00 NN 70-40% CisBP GTAAACATAAACA 60.5% identity Open · Scan
M00665_2.00 NN 70-40% CisBP ATGTAAACAAA 60.2% identity Open · Scan
M03046_2.00 NN 70-40% CisBP GTAAACAA 60.2% identity Open · Scan
MA0851.1 NN 70-40% JASPAR AAAAAGTAAACAAACAC 60.2% identity Open · Scan
MA0030.1 NN 70-40% JASPAR CAAACGTAAACAAT 60.1% identity Open · Scan
M04827_2.00 NN 70-40% CisBP GTAATGTAAACAA 59.4% identity Open · Scan
M04848_2.00 NN 70-40% CisBP AACGTCAACAC 59.2% identity Open · Scan
MA1607.1 NN 70-40% JASPAR AATATGTAAACAAA 59.2% identity Open · Scan
MA0040.1 NN 70-40% JASPAR TATTGTTTATT 57.4% identity Open · Scan
M10528_2.00 NN 70-40% CisBP ATAATAATATTTTT 56.7% identity Open · Scan
MA0614.1 NN 70-40% JASPAR GTAAACAA 56.7% identity Open · Scan
M01974_2.00 NN 70-40% CisBP GTAAACAA 55.9% identity Open · Scan
M09093_2.00 NN 70-40% CisBP AAATAAACAATA 54.0% identity Open · Scan
M00044_2.00 NN 70-40% CisBP GGTAAACAA 52.2% identity Open · Scan
MA0852.1 NN 70-40% JASPAR AAAATGTAAACAAACAG 52.0% identity Open · Scan
MA0852.2 NN 70-40% JASPAR AATGTAAACAAGGC 52.0% identity Open · Scan
MA1103.1 NN 70-40% JASPAR ATGTAAACAAG 52.0% identity Open · Scan
M03012_2.00 NN 70-40% CisBP GTAAACA 51.5% identity Open · Scan
M01016_2.00 NN 70-40% CisBP TGGACGCTAA 51.2% identity Open · Scan
M01987_2.00 NN 70-40% CisBP GTAAACAAA 50.4% identity Open · Scan
M04835_2.00 NN 70-40% CisBP ACGCGTCGTTACGACGCGT 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 439 aa
104-170

Region 104-170 0 PWM

Residues
67 aa
Domains
PF00250 · Forkhead domain
3D models
1 active PDB
Templates
2A07
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 104-1701 model
Actions
Predicted = Low DIMER_Q12950:104:170_2a07_K_1 2a07 104-170 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
104-188PF00250Forkhead domainoverlaps 104-170