ModCRE DB

Transcription factor

Q13028

Homeobox protein

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 34 aa

224 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)22
MotifPredictionSourceDNA bindingSupportLogoActions
M05392_2.00 NN 70+% CisBP GTTAAGTGC 97.0% identity Open · Scan
MA0896.1 NN 70+% JASPAR ACAAGCAATTAATGAAT 97.0% identity Open · Scan
M06554_2.00 NN 70+% CisBP TTAATTG 91.1% identity Open · Scan
M10754_2.00 NN 70+% CisBP CAAGTGCGTG 88.2% identity Open · Scan
MA0898.1 NN 70+% JASPAR ACAAGCAATTAAAGAAT 88.2% identity Open · Scan
M03234_2.00 NN 70+% CisBP TTTTAATTGGT 82.3% identity Open · Scan
MA0897.1 NN 70+% JASPAR ACAAGCAATTAAAGAAT 82.3% identity Open · Scan
MA0122.1 NN 70+% JASPAR TTAAGTGGA 79.4% identity Open · Scan
MA0122.2 NN 70+% JASPAR ACCACTTAA 79.4% identity Open · Scan
M03798_2.00 NN 70+% CisBP GGTAATTAGC 73.5% identity Open · Scan
MA0666.1 NN 70+% JASPAR CCAATTAG 73.5% identity Open · Scan
MA0708.1 NN 70+% JASPAR CCAATTAA 73.5% identity Open · Scan
MA0709.1 NN 70+% JASPAR CCAATTAA 73.5% identity Open · Scan
MA0710.1 NN 70+% JASPAR GCTAATTAGC 70.8% identity Open · Scan
M00497_2.00 NN 70+% CisBP TTAAGTGGT 70.5% identity Open · Scan
M03777_2.00 NN 70+% CisBP GTAATTGC 70.5% identity Open · Scan
M05042_2.00 NN 70+% CisBP GTCAAGTGGT 70.5% identity Open · Scan
M06504_2.00 NN 70+% CisBP TTAAGTG 70.5% identity Open · Scan
MA0124.1 NN 70+% JASPAR ATACTTA 70.5% identity Open · Scan
MA0124.2 NN 70+% JASPAR ACCACTTAA 70.5% identity Open · Scan
MA0672.1 NN 70+% JASPAR ACCACTTGAA 70.5% identity Open · Scan
MA0885.1 NN 70+% JASPAR GCAATTAA 70.5% identity Open · Scan
Nearest Neighbor (70% - 40%)202
MotifPredictionSourceDNA bindingSupportLogoActions
M03775_2.00 NN 70-40% CisBP GTTTTATGTGTTTT 68.9% identity Open · Scan
M00388_2.00 NN 70-40% CisBP CTAATTGCTT 67.6% identity Open · Scan
M00496_2.00 NN 70-40% CisBP TTAAGTGGTT 67.6% identity Open · Scan
M01503_2.00 NN 70-40% CisBP TTAATTAC 67.6% identity Open · Scan
M04906_2.00 NN 70-40% CisBP ATAACGAC 67.6% identity Open · Scan
M04959_2.00 NN 70-40% CisBP GTAATTAC 67.6% identity Open · Scan
M05179_2.00 NN 70-40% CisBP ATAATTGC 67.6% identity Open · Scan
M06232_2.00 NN 70-40% CisBP TTAATGA 67.6% identity Open · Scan
M09195_2.00 NN 70-40% CisBP TAATTATAGGT 67.6% identity Open · Scan
M09196_2.00 NN 70-40% CisBP TTGATGGATG 67.6% identity Open · Scan
MA0063.1 NN 70-40% JASPAR TTAATTG 67.6% identity Open · Scan
MA0063.2 NN 70-40% JASPAR ACCACTCAAAA 67.6% identity Open · Scan
MA0707.1 NN 70-40% JASPAR GGTAATTAAA 67.6% identity Open · Scan
MA0876.1 NN 70-40% JASPAR CCAATTAA 67.6% identity Open · Scan
MA0879.1 NN 70-40% JASPAR CCTAATTATC 67.6% identity Open · Scan
MA0880.1 NN 70-40% JASPAR CCAATTAC 67.6% identity Open · Scan
MA0882.1 NN 70-40% JASPAR CCAATTAC 67.6% identity Open · Scan
MA1476.1 NN 70-40% JASPAR GCAATTAC 67.6% identity Open · Scan
MA1495.1 NN 70-40% JASPAR GTAATTAC 67.6% identity Open · Scan
M06540_2.00 NN 70-40% CisBP TTAATTA 65.5% identity Open · Scan
M00520_2.00 NN 70-40% CisBP CTTAAGTGCT 64.7% identity Open · Scan
M05003_2.00 NN 70-40% CisBP ATAACGAC 64.7% identity Open · Scan
M05057_2.00 NN 70-40% CisBP TTAATTAC 64.7% identity Open · Scan
M06261_2.00 NN 70-40% CisBP TTAATTA 64.7% identity Open · Scan
M06286_2.00 NN 70-40% CisBP CTTAAGTG 64.7% identity Open · Scan
M06312_2.00 NN 70-40% CisBP TTAATTA 64.7% identity Open · Scan
M06323_2.00 NN 70-40% CisBP ATTAATTG 64.7% identity Open · Scan
M10805_2.00 NN 70-40% CisBP GGACAAATAGCCC 64.7% identity Open · Scan
MA0673.1 NN 70-40% JASPAR CCACTTGAA 64.7% identity Open · Scan
MA0881.1 NN 70-40% JASPAR CCAATTAC 64.7% identity Open · Scan
MA0886.1 NN 70-40% JASPAR GCTAATTAGC 64.7% identity Open · Scan
M05105_2.00 NN 70-40% CisBP GTCGTAAAAT 62.0% identity Open · Scan
M05272_2.00 NN 70-40% CisBP TTAACGAG 62.0% identity Open · Scan
MA0485.1 NN 70-40% JASPAR GGCCATAAATCAC 62.0% identity Open · Scan
MA0485.2 NN 70-40% JASPAR GTCGTAAAAT 62.0% identity Open · Scan
MA0594.1 NN 70-40% JASPAR GCCATAAATCA 62.0% identity Open · Scan
MA0594.2 NN 70-40% JASPAR GTCGTAAACG 62.0% identity Open · Scan
MA0913.1 NN 70-40% JASPAR GCAATAAAAA 62.0% identity Open · Scan
MA0913.2 NN 70-40% JASPAR GCAATAAAAC 62.0% identity Open · Scan
M00438_2.00 NN 70-40% CisBP TTTAAGTGC 61.7% identity Open · Scan
M00462_2.00 NN 70-40% CisBP CTAATTG 61.7% identity Open · Scan
M02106_2.00 NN 70-40% CisBP ATATTAATTGGTT 61.7% identity Open · Scan
M03152_2.00 NN 70-40% CisBP TAATTAGCTAATTA 61.7% identity Open · Scan
M03814_2.00 NN 70-40% CisBP GTAATGGC 61.7% identity Open · Scan
M03854_2.00 NN 70-40% CisBP GTGAAGTGG 61.7% identity Open · Scan
M06378_2.00 NN 70-40% CisBP GCTCAAGTGC 61.7% identity Open · Scan
M06548_2.00 NN 70-40% CisBP TTAATTG 61.7% identity Open · Scan
M09573_2.00 NN 70-40% CisBP GTTAATGA 61.7% identity Open · Scan
M10761_2.00 NN 70-40% CisBP CATAAAT 61.7% identity Open · Scan
MA0612.1 NN 70-40% JASPAR CCTAATTACC 61.7% identity Open · Scan
MA0674.1 NN 70-40% JASPAR GTAATTAA 61.7% identity Open · Scan
MA0675.1 NN 70-40% JASPAR CTAATTAA 61.7% identity Open · Scan
MA0877.1 NN 70-40% JASPAR GCTAATTGCT 61.7% identity Open · Scan
MA0877.2 NN 70-40% JASPAR CTAAACGG 61.7% identity Open · Scan
MA0889.1 NN 70-40% JASPAR ACTAATTAGC 61.7% identity Open · Scan
MA0890.1 NN 70-40% JASPAR ACCAATTAGC 61.7% identity Open · Scan
MA1530.1 NN 70-40% JASPAR CTCATTAAA 61.7% identity Open · Scan
MA1645.1 NN 70-40% JASPAR TAACCACTCAAGAA 61.7% identity Open · Scan
M00526_2.00 NN 70-40% CisBP ATTAATTA 61.2% identity Open · Scan
M02153_2.00 NN 70-40% CisBP GCCCAATAAA 61.2% identity Open · Scan
MA1577.1 NN 70-40% JASPAR CTAATTAG 61.2% identity Open · Scan
M00464_2.00 NN 70-40% CisBP CTAATTACC 60.0% identity Open · Scan
MA0722.1 NN 70-40% JASPAR CTAATTAC 60.0% identity Open · Scan
MA0723.1 NN 70-40% JASPAR CTAATTAC 60.0% identity Open · Scan
M00376_2.00 NN 70-40% CisBP TCAAGTGCTT 58.8% identity Open · Scan
M00385_2.00 NN 70-40% CisBP TTAAGTGG 58.8% identity Open · Scan
M00457_2.00 NN 70-40% CisBP TTAATTGCT 58.8% identity Open · Scan
M00492_2.00 NN 70-40% CisBP TAATTAGC 58.8% identity Open · Scan
M02179_2.00 NN 70-40% CisBP GCTAATTAC 58.8% identity Open · Scan
M02181_2.00 NN 70-40% CisBP TTAAGTGGT 58.8% identity Open · Scan
M05019_2.00 NN 70-40% CisBP GGTCGTAAAAC 58.8% identity Open · Scan
M06264_2.00 NN 70-40% CisBP GCTAATTA 58.8% identity Open · Scan
M06290_2.00 NN 70-40% CisBP TTTAATTA 58.8% identity Open · Scan
M06359_2.00 NN 70-40% CisBP TTTAATTA 58.8% identity Open · Scan
M06544_2.00 NN 70-40% CisBP GTAATTA 58.8% identity Open · Scan
M06545_2.00 NN 70-40% CisBP TTAATTA 58.8% identity Open · Scan
M09146_2.00 NN 70-40% CisBP CTTGAGTGGC 58.8% identity Open · Scan
M09186_2.00 NN 70-40% CisBP ACATAAAT 58.8% identity Open · Scan
M09582_2.00 NN 70-40% CisBP ATGATTGATG 58.8% identity Open · Scan
M09676_2.00 NN 70-40% CisBP TTAATGA 58.8% identity Open · Scan
MA0119.1 NN 70-40% JASPAR TGGCACCATGCCAA 58.8% identity Open · Scan
MA0465.1 NN 70-40% JASPAR AAGCCATAAAA 58.8% identity Open · Scan
MA0635.1 NN 70-40% JASPAR GCTAAACGGT 58.8% identity Open · Scan
MA0878.1 NN 70-40% JASPAR GCAATAAAA 58.8% identity Open · Scan
MA1471.1 NN 70-40% JASPAR AAAAACCATTAC 58.8% identity Open · Scan
M00391_2.00 NN 70-40% CisBP TTAATTGCC 58.6% identity Open · Scan
M00410_2.00 NN 70-40% CisBP TTTTATGACC 58.6% identity Open · Scan
M00671_2.00 NN 70-40% CisBP TTAATTAGTC 58.6% identity Open · Scan
M02187_2.00 NN 70-40% CisBP AGTAATTACT 58.6% identity Open · Scan
M03104_2.00 NN 70-40% CisBP TTAATTACGGTAATTAC 58.6% identity Open · Scan
M03271_2.00 NN 70-40% CisBP GTAATTAC 58.6% identity Open · Scan
M03832_2.00 NN 70-40% CisBP GGTAATTACC 58.6% identity Open · Scan
M05312_2.00 NN 70-40% CisBP TTAACGAC 58.6% identity Open · Scan
MA0706.1 NN 70-40% JASPAR AGTAATTAAC 58.6% identity Open · Scan
MA0910.1 NN 70-40% JASPAR TAAATAATTAATGGCTA 58.6% identity Open · Scan
MA0910.2 NN 70-40% JASPAR GCAATTAC 58.6% identity Open · Scan
MA1502.1 NN 70-40% JASPAR GCAATTAC 58.6% identity Open · Scan
MA1503.1 NN 70-40% JASPAR GTCGTAAAAT 58.6% identity Open · Scan
MA1505.1 NN 70-40% JASPAR GTAATTAC 58.6% identity Open · Scan
M06219_2.00 NN 70-40% CisBP GTTAATCC 56.6% identity Open · Scan
M06224_2.00 NN 70-40% CisBP ATCATAAAA 56.6% identity Open · Scan
M00417_2.00 NN 70-40% CisBP GCTAATTA 56.5% identity Open · Scan
M02082_2.00 NN 70-40% CisBP ATTGTACAAT 56.5% identity Open · Scan
M06322_2.00 NN 70-40% CisBP TTAATTA 56.5% identity Open · Scan
M06326_2.00 NN 70-40% CisBP TTAATT 56.5% identity Open · Scan
M10741_2.00 NN 70-40% CisBP AACTAATTACCATTATCG 56.5% identity Open · Scan
MA0681.1 NN 70-40% JASPAR TAATTTAATTA 56.5% identity Open · Scan
MA0713.1 NN 70-40% JASPAR TAATTTAATTA 56.5% identity Open · Scan
MA0854.1 NN 70-40% JASPAR CGAATTAATTAATCACC 56.5% identity Open · Scan
MA0894.1 NN 70-40% JASPAR GCTAATTGGC 56.5% identity Open · Scan
M00392_2.00 NN 70-40% CisBP TTAATTAC 55.8% identity Open · Scan
M00403_2.00 NN 70-40% CisBP CTAATTACC 55.8% identity Open · Scan
M00465_2.00 NN 70-40% CisBP TTAATTAG 55.8% identity Open · Scan
M00469_2.00 NN 70-40% CisBP TTAATTACC 55.8% identity Open · Scan
M00476_2.00 NN 70-40% CisBP TTAATGGCC 55.8% identity Open · Scan
M00494_2.00 NN 70-40% CisBP TTAATTACC 55.8% identity Open · Scan
M00532_2.00 NN 70-40% CisBP TTAATGACC 55.8% identity Open · Scan
M01244_2.00 NN 70-40% CisBP ATTAATTAC 55.8% identity Open · Scan
M02107_2.00 NN 70-40% CisBP TTAATTGCT 55.8% identity Open · Scan
M03799_2.00 NN 70-40% CisBP GTAATTAC 55.8% identity Open · Scan
M05100_2.00 NN 70-40% CisBP TTAACGAC 55.8% identity Open · Scan
M06281_2.00 NN 70-40% CisBP TTAATTA 55.8% identity Open · Scan
M06329_2.00 NN 70-40% CisBP CACTAATTA 55.8% identity Open · Scan
M06339_2.00 NN 70-40% CisBP TTTAATTGG 55.8% identity Open · Scan
M06361_2.00 NN 70-40% CisBP TTTAATTA 55.8% identity Open · Scan
M06539_2.00 NN 70-40% CisBP CTAATTA 55.8% identity Open · Scan
M06549_2.00 NN 70-40% CisBP TTAATGA 55.8% identity Open · Scan
M09181_2.00 NN 70-40% CisBP TTTAATTGTTTT 55.8% identity Open · Scan
M09193_2.00 NN 70-40% CisBP TTTTATGGCCTT 55.8% identity Open · Scan
M09206_2.00 NN 70-40% CisBP CATTAATCAA 55.8% identity Open · Scan
MA0724.1 NN 70-40% JASPAR ACCGATTAG 55.8% identity Open · Scan
MA0875.1 NN 70-40% JASPAR GCAATTAG 55.8% identity Open · Scan
MA0893.1 NN 70-40% JASPAR ACTAATTAAA 55.8% identity Open · Scan
MA0900.1 NN 70-40% JASPAR CCTAATTACC 55.8% identity Open · Scan
MA0902.1 NN 70-40% JASPAR AGTAATTAAC 55.8% identity Open · Scan
MA0912.1 NN 70-40% JASPAR TTGAGTTAATTAACCT 55.8% identity Open · Scan
MA0912.2 NN 70-40% JASPAR CTAATTAC 55.8% identity Open · Scan
MA1496.1 NN 70-40% JASPAR GTCATTAG 55.8% identity Open · Scan
MA1497.1 NN 70-40% JASPAR GGTAATTAAC 55.8% identity Open · Scan
MA1498.1 NN 70-40% JASPAR GCAATTAC 55.8% identity Open · Scan
MA1500.1 NN 70-40% JASPAR TTAATTAC 55.8% identity Open · Scan
MA1501.1 NN 70-40% JASPAR GGTAATTAAC 55.8% identity Open · Scan
MA1504.1 NN 70-40% JASPAR GTCATTAA 55.8% identity Open · Scan
M09227_2.00 NN 70-40% CisBP CTCATGAATATTCAAG 55.5% identity Open · Scan
MA0786.1 NN 70-40% JASPAR TTATGCAAATTA 55.5% identity Open · Scan
M00474_2.00 NN 70-40% CisBP TTTATGACC 55.1% identity Open · Scan
M05394_2.00 NN 70-40% CisBP GGTCGTAAAAC 55.1% identity Open · Scan
M06241_2.00 NN 70-40% CisBP CGTTAATTATTT 55.1% identity Open · Scan
M09170_2.00 NN 70-40% CisBP TCATAAATCATC 55.1% identity Open · Scan
MA0651.1 NN 70-40% JASPAR GGTCGTAAAAT 55.1% identity Open · Scan
MA0661.1 NN 70-40% JASPAR GCTAATTAAC 55.1% identity Open · Scan
MA0899.1 NN 70-40% JASPAR GGTAATAAAAA 55.1% identity Open · Scan
MA0908.1 NN 70-40% JASPAR GTCGTAAAAA 55.1% identity Open · Scan
MA0911.1 NN 70-40% JASPAR GGTCGTAAAATT 55.1% identity Open · Scan
MA1506.1 NN 70-40% JASPAR GGTCGTAAAAC 55.1% identity Open · Scan
M02214_2.00 NN 70-40% CisBP AATAATTATA 53.3% identity Open · Scan
M04940_2.00 NN 70-40% CisBP CCGTATCATT 53.3% identity Open · Scan
M00422_2.00 NN 70-40% CisBP TTAATGA 52.9% identity Open · Scan
M00451_2.00 NN 70-40% CisBP ATTAATTA 52.9% identity Open · Scan
M02128_2.00 NN 70-40% CisBP ATTAATTA 52.9% identity Open · Scan
M02150_2.00 NN 70-40% CisBP TTAATTAA 52.9% identity Open · Scan
M02164_2.00 NN 70-40% CisBP GTAATGGGCT 52.9% identity Open · Scan
M02165_2.00 NN 70-40% CisBP CTTAATTGG 52.9% identity Open · Scan
M02166_2.00 NN 70-40% CisBP CTAATTAC 52.9% identity Open · Scan
M02170_2.00 NN 70-40% CisBP TTAATTAG 52.9% identity Open · Scan
M02205_2.00 NN 70-40% CisBP CATTAATTACC 52.9% identity Open · Scan
M02210_2.00 NN 70-40% CisBP AAGTACTTAA 52.9% identity Open · Scan
M03276_2.00 NN 70-40% CisBP GCTAATTAGC 52.9% identity Open · Scan
M06227_2.00 NN 70-40% CisBP TTAATTAT 52.9% identity Open · Scan
M06489_2.00 NN 70-40% CisBP TTAATTA 52.9% identity Open · Scan
M09204_2.00 NN 70-40% CisBP TTAATGGC 52.9% identity Open · Scan
M09680_2.00 NN 70-40% CisBP TTAATTA 52.9% identity Open · Scan
MA0132.1 NN 70-40% JASPAR CTAATT 52.9% identity Open · Scan
MA0132.2 NN 70-40% JASPAR GTAATTAG 52.9% identity Open · Scan
MA0158.1 NN 70-40% JASPAR CACTAATT 52.9% identity Open · Scan
MA0618.1 NN 70-40% JASPAR TTAATTAG 52.9% identity Open · Scan
MA0642.1 NN 70-40% JASPAR CCCAATTAGC 52.9% identity Open · Scan
MA0644.1 NN 70-40% JASPAR ACCAATTAAC 52.9% identity Open · Scan
MA0699.1 NN 70-40% JASPAR GCCAATTAGC 52.9% identity Open · Scan
MA0887.1 NN 70-40% JASPAR GGTAATTAGC 52.9% identity Open · Scan
MA0888.1 NN 70-40% JASPAR GGTAATTAGC 52.9% identity Open · Scan
MA0903.1 NN 70-40% JASPAR ACTAATTAGC 52.9% identity Open · Scan
MA0904.1 NN 70-40% JASPAR ACGGTAATTAGCTCAT 52.9% identity Open · Scan
MA0904.2 NN 70-40% JASPAR GTAATTAC 52.9% identity Open · Scan
MA1473.1 NN 70-40% JASPAR GGCAATAAAAC 52.9% identity Open · Scan
MA1499.1 NN 70-40% JASPAR ATCATTAG 52.9% identity Open · Scan
MA1507.1 NN 70-40% JASPAR ATCATTAG 52.9% identity Open · Scan
M02059_2.00 NN 70-40% CisBP TTAATTGATA 52.0% identity Open · Scan
M03253_2.00 NN 70-40% CisBP TTTTTATTAC 51.7% identity Open · Scan
MA0905.1 NN 70-40% JASPAR GTCGTAAAAT 51.7% identity Open · Scan
M02062_2.00 NN 70-40% CisBP TTAATGGGCT 50.0% identity Open · Scan
M02142_2.00 NN 70-40% CisBP AATCGATC 50.0% identity Open · Scan
M02143_2.00 NN 70-40% CisBP TTAATTGG 50.0% identity Open · Scan
M02149_2.00 NN 70-40% CisBP TCAAGTGCTT 50.0% identity Open · Scan
M02211_2.00 NN 70-40% CisBP TTAATTAC 50.0% identity Open · Scan
M03810_2.00 NN 70-40% CisBP GCTAAACGGT 50.0% identity Open · Scan
M03815_2.00 NN 70-40% CisBP TTAATTAG 50.0% identity Open · Scan
M06238_2.00 NN 70-40% CisBP TCTTAATTAG 50.0% identity Open · Scan
M06248_2.00 NN 70-40% CisBP TAATTGCC 50.0% identity Open · Scan
M06929_2.00 NN 70-40% CisBP TAAATGATTAA 50.0% identity Open · Scan
MA0027.1 NN 70-40% JASPAR AAGTAGTGCCC 50.0% identity Open · Scan
MA0027.2 NN 70-40% JASPAR CTAATTAG 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 34 aa
1-34

Region 1-34 0 PWM

Residues
34 aa
Domains
PF00046 · Homeodomain
3D models
1 active PDB
Templates
1B72
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 1-341 model
Actions
Predicted = Low DIMER_Q13028:1:34_1b72_A_1 1b72 1-34 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
1-34PF00046Homeodomainoverlaps 1-34