ModCRE DB

Transcription factor

Q13129 - RLF

Zinc finger protein Rlf (Rearranged L-myc fusion gene protein) (Zn-15-related protein)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 1914 aa

8 Generated PWM 8 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE8
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_sp_Q13129_RLF_HUMAN:1171:1192_1llm_C_1 ModCRE Homology model GCGCCGCGGGGG Region 1171-1192 · 1 3D model Open · Scan
TFS_sp_Q13129_RLF_HUMAN:567:609_2i13_A_1 ModCRE Homology model ATTTTTGCGAGGGAAA Region 567-609 · 1 3D model Open · Scan
TFS_sp_Q13129_RLF_HUMAN:581:601_2drp_A_1 ModCRE Homology model GCCGCGAATTAA Region 581-601 · 1 3D model Open · Scan
TFS_sp_Q13129_RLF_HUMAN:719:825_2jp9_A_1 ModCRE Homology model GGGGGCCCCCCCCAAGG Region 719-825 · 1 3D model Open · Scan
TFS_sp_Q13129_RLF_HUMAN:719:825_2jpa_A_1 ModCRE Homology model CCAGGCCCAGTGTA Region 719-825 · 1 3D model Open · Scan
TFS_sp_Q13129_RLF_HUMAN:719:825_2prt_A_1 ModCRE Homology model AGAGCCTCTTTA Region 719-825 · 1 3D model Open · Scan
TFS_sp_Q13129_RLF_HUMAN:719:825_6b0o_A_1 ModCRE Homology model AAAGCCCGTTAG Region 719-825 · 1 3D model Open · Scan
TFS_sp_Q13129_RLF_HUMAN:719:825_6b0r_D_1 ModCRE Homology model CCTCTAGGGGCGC Region 719-825 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 1914 aa
567-609
719-825
1171-1192

Region 567-609 2 PWM

Residues
43 aa
Domains
PF25420 · ZN292-like C2H2 zinc finger
3D models
2 active PDBs
Templates
2DRP, 2I13
Sources
Predicted = Low
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Region 719-825 5 PWM

Residues
107 aa
Domains
No overlapping PFAM annotation recorded
3D models
5 active PDBs · 5 summary rows
Templates
2JP9, 2JPA, 2PRT, 6B0O, 6B0R
Sources
Predicted = Low
Scan this region Show models

Region 1171-1192 1 PWM

Residues
22 aa
Domains
PF00096 · Zinc finger, C2H2 type
3D models
1 active PDB · 1 summary row
Templates
1LLM
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
8 active PDB models 6 summary rows
Region 567-6092 models
Actions
Predicted = Low TFS_sp_Q13129_RLF_HUMAN:567:609_2i13_A_1 2i13 567-609 View model · PDB
Predicted = Low TFS_sp_Q13129_RLF_HUMAN:581:601_2drp_A_1 2drp 581-601 View model · PDB
Region 719-8255 models · 5 summary rows
Actions
Predicted = Low TFS_sp_Q13129_RLF_HUMAN:719:825_2jp9_A_1 2jp9 719-825 View model · PDB
Predicted = Low TFS_sp_Q13129_RLF_HUMAN:719:825_2jpa_A_1 2jpa 719-825 View model · PDB
Predicted = Low TFS_sp_Q13129_RLF_HUMAN:719:825_2prt_A_1 2prt 719-825 View model · PDB
Predicted = Low TFS_sp_Q13129_RLF_HUMAN:719:825_6b0o_A_1 6b0o 719-825 View model · PDB
Predicted = Low TFS_sp_Q13129_RLF_HUMAN:719:825_6b0r_D_1 6b0r 719-825 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 6b0r 697:828 719 825 P:D · DNA:E,F 27.1% / 45.8% 90 View · PDB TFS_sp_Q13129_RLF_HUMAN:719:825_6b0r_D_1
2 2jpa 697:828 719 825 P:A · DNA:B,C 27.1% / 45.8% 89 View · PDB TFS_sp_Q13129_RLF_HUMAN:719:825_2jpa_A_1
3 2jp9 697:828 719 825 P:A · DNA:B,C 27.1% / 45.8% 89 View · PDB TFS_sp_Q13129_RLF_HUMAN:719:825_2jp9_A_1
4 2prt 697:828 719 825 P:A · DNA:B,C 27.1% / 45.8% 92 View · PDB TFS_sp_Q13129_RLF_HUMAN:719:825_2prt_A_1
5 6b0o 697:828 719 825 P:A · DNA:B,C 27.1% / 45.8% 89 View · PDB TFS_sp_Q13129_RLF_HUMAN:719:825_6b0o_A_1
Region 1171-11921 model · 1 summary row
Actions
Predicted = Low DIMER_sp_Q13129_RLF_HUMAN:1171:1192_1llm_C_1 1llm 1171-1192 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 1llm 697:828 1171,1171 1192,1192 P:C,D · DNA:A,B 54.5% / 68.2% 25,25 View · PDB DIMER_sp_Q13129_RLF_HUMAN:1171:1192_1llm_C_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
270-491PF25580Zinc finger protein Rlf-like, TPR repeatsNo overlap with loaded model regions
544-576PF25420ZN292-like C2H2 zinc fingeroverlaps 567-609
1172-1195PF00096Zinc finger, C2H2 typeoverlaps 1171-1192
1531-1590PF26218Zinc finger protein 292, C2H2-type zinc fingerNo overlap with loaded model regions