Transcription factor

Q13580 - kr-znf1

KR-ZNF1

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 120 aa

81 Generated PWM 6 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)76

Motif	Prediction	Source	DNA binding	Support	Logo	Actions
M07714_2.00	NN 70-40%	CisBP	AGCCCATTGGGGCCTATGCCC	62.3% identity		Open · Scan
M08252_2.00	NN 70-40%	CisBP	CCGGCTCCAGCACCC	61.5% identity		Open · Scan
M08934_2.00	NN 70-40%	CisBP	GCTGTACCTGCTTATTAGGC	60.6% identity		Open · Scan
M00955_2.00	NN 70-40%	CisBP	ACGTCCTCT	60.4% identity		Open · Scan
M07667_2.00	NN 70-40%	CisBP	CCGCACAGGCCCCCGGGCCCC	60.0% identity		Open · Scan
M07579_2.00	NN 70-40%	CisBP	CATCTCCAGGA	57.7% identity		Open · Scan
M07689_2.00	NN 70-40%	CisBP	ACCCAGGCTCCTTCCATCTTGTGGCTC	57.3% identity		Open · Scan
M00782_2.00	NN 70-40%	CisBP	AGTGTGCGCTA	56.5% identity		Open · Scan
M08355_2.00	NN 70-40%	CisBP	GCGAACTCCTATTCATCC	56.4% identity		Open · Scan
M07678_2.00	NN 70-40%	CisBP	CCCGCCCCCTCCTCCCCCTTCCCACCC	55.6% identity		Open · Scan
M08914_2.00	NN 70-40%	CisBP	ATTTAGTCCATTTACATTTAATGT	55.6% identity		Open · Scan
M08985_2.00	NN 70-40%	CisBP	TGAGGACCTACTGTGTGCC	55.6% identity		Open · Scan
M00939_2.00	NN 70-40%	CisBP	CCACCTCA	55.5% identity		Open · Scan
M07684_2.00	NN 70-40%	CisBP	CCTGTTCTTGACTTT	55.5% identity		Open · Scan
M07761_2.00	NN 70-40%	CisBP	CTGATTATTCACCCA	55.5% identity		Open · Scan
M08255_2.00	NN 70-40%	CisBP	CTCTTCCGGT	54.7% identity		Open · Scan
M08256_2.00	NN 70-40%	CisBP	GTGCCTT	54.7% identity		Open · Scan
M08347_2.00	NN 70-40%	CisBP	GCCCTGGGCAGC	54.7% identity		Open · Scan
M08949_2.00	NN 70-40%	CisBP	TTCTATTTCTTCTTGTGTCA	54.7% identity		Open · Scan
M00943_2.00	NN 70-40%	CisBP	CCCGCTGC	54.3% identity		Open · Scan
M00953_2.00	NN 70-40%	CisBP	ATCTATAT	54.3% identity		Open · Scan
M07578_2.00	NN 70-40%	CisBP	CAACTCTCC	54.3% identity		Open · Scan
M00960_2.00	NN 70-40%	CisBP	TGCATCCC	54.1% identity		Open · Scan
M07605_2.00	NN 70-40%	CisBP	TATTTTTTTTTATTTTTTTTTTTTTTTTTT	53.8% identity		Open · Scan
M07658_2.00	NN 70-40%	CisBP	CCGCCGCAGCCGCCG	53.8% identity		Open · Scan
M07700_2.00	NN 70-40%	CisBP	ATGTTGTGAGGAAGCCCA	53.8% identity		Open · Scan
M08274_2.00	NN 70-40%	CisBP	TTACTTGCAGCCCAACGCATTCCTAAC	53.8% identity		Open · Scan
M08392_2.00	NN 70-40%	CisBP	CTTCACCTGCTGAGG	53.8% identity		Open · Scan
M07590_2.00	NN 70-40%	CisBP	TTTTTTTCTTTTATTTTTTTTTTTTTTTTTTTT	53.7% identity		Open · Scan
M01432_2.00	NN 70-40%	CisBP	GACGCCAC	53.5% identity		Open · Scan
MA1650.1	NN 70-40%	JASPAR	CCCCGCGCACCC	53.5% identity		Open · Scan
M07777_2.00	NN 70-40%	CisBP	GCCAATTTCCGTGGTGTAAAT	53.4% identity		Open · Scan
M00149_2.00	NN 70-40%	CisBP	CGTACGCC	53.0% identity		Open · Scan
M00944_2.00	NN 70-40%	CisBP	TCGCTATAA	52.9% identity		Open · Scan
M00948_2.00	NN 70-40%	CisBP	GCAGCACC	52.9% identity		Open · Scan
M08371_2.00	NN 70-40%	CisBP	CCAGACTTGTCCTCT	52.9% identity		Open · Scan
M08375_2.00	NN 70-40%	CisBP	TTCCCCATTGGCTACTGCACCGGTCCT	52.9% identity		Open · Scan
M08935_2.00	NN 70-40%	CisBP	CCTCCTCCCTCAGACC	52.9% identity		Open · Scan
M04650_2.00	NN 70-40%	CisBP	GCATAACTGCCCCGCTGCC	52.1% identity		Open · Scan
M07581_2.00	NN 70-40%	CisBP	TCCCCTGTGCTTCTCTCCCCT	52.1% identity		Open · Scan
M07588_2.00	NN 70-40%	CisBP	TCCTTCCCTCTTTCC	52.1% identity		Open · Scan
M07635_2.00	NN 70-40%	CisBP	AAGTTTTCTTGTATTATATCT	52.1% identity		Open · Scan
M07762_2.00	NN 70-40%	CisBP	GCCGCGCACAGGCTTCTAGCC	52.1% identity		Open · Scan
M08917_2.00	NN 70-40%	CisBP	GCTGAGCCATGTGGGGTGCT	52.1% identity		Open · Scan
M08944_2.00	NN 70-40%	CisBP	TACCATGCTGTTTTGATTAC	52.1% identity		Open · Scan
MA1514.1	NN 70-40%	JASPAR	CACCACGCACCCCTT	52.1% identity		Open · Scan
MA1587.1	NN 70-40%	JASPAR	CCTCGACCTCCTGA	52.1% identity		Open · Scan
M07699_2.00	NN 70-40%	CisBP	GGTTTAT	52.0% identity		Open · Scan
MA0528.1	NN 70-40%	JASPAR	GGAGGAGGAGGGGGAGGAGGA	51.8% identity		Open · Scan
M00952_2.00	NN 70-40%	CisBP	GGATGCTC	51.7% identity		Open · Scan
M00959_2.00	NN 70-40%	CisBP	GCCCTCCC	51.7% identity		Open · Scan
M00764_2.00	NN 70-40%	CisBP	GTCTACAC	51.2% identity		Open · Scan
M02913_2.00	NN 70-40%	CisBP	TTCGTGGCATTTTTCTA	51.2% identity		Open · Scan
M07598_2.00	NN 70-40%	CisBP	CTGACAATACCAAGTGTTGAC	51.2% identity		Open · Scan
M08279_2.00	NN 70-40%	CisBP	CCTCCCTCC	51.2% identity		Open · Scan
M08887_2.00	NN 70-40%	CisBP	CCTCCTCCAGGAAGCCTTCCCTGA	51.2% identity		Open · Scan
M07625_2.00	NN 70-40%	CisBP	TCTCTCTCTCTCTCTCTCTCTCTCTCTCTC	50.9% identity		Open · Scan
M08329_2.00	NN 70-40%	CisBP	GCTGCATAGTATTCC	50.8% identity		Open · Scan
M00950_2.00	NN 70-40%	CisBP	GCAGCCCA	50.5% identity		Open · Scan
M00958_2.00	NN 70-40%	CisBP	CGGCATCCC	50.5% identity		Open · Scan
MA1652.1	NN 70-40%	JASPAR	GGAGGAGGTGAGAA	50.5% identity		Open · Scan
M00250_2.00	NN 70-40%	CisBP	AATGCTAACT	50.4% identity		Open · Scan
M06108_2.00	NN 70-40%	CisBP	ACAACAACAAC	50.4% identity		Open · Scan
M07562_2.00	NN 70-40%	CisBP	GAAAAAAAC	50.4% identity		Open · Scan
M07582_2.00	NN 70-40%	CisBP	TCCCTG	50.4% identity		Open · Scan
M07649_2.00	NN 70-40%	CisBP	CCCCCCCCCCCCTCAGGAATGCC	50.4% identity		Open · Scan
M07740_2.00	NN 70-40%	CisBP	TCCTGATTCCACACTCAAACATAACTTT	50.4% identity		Open · Scan
M08267_2.00	NN 70-40%	CisBP	CAGTTTCATTTTCC	50.4% identity		Open · Scan
M08357_2.00	NN 70-40%	CisBP	GAGCCTGCTACTGAGCCTGGG	50.4% identity		Open · Scan
M08395_2.00	NN 70-40%	CisBP	GCTGCCTACTCTTCC	50.4% identity		Open · Scan
M08295_2.00	NN 70-40%	CisBP	CTGCTGGAATCTCCA	50.0% identity		Open · Scan
M08390_2.00	NN 70-40%	CisBP	GCTTTGTTGACTCAC	50.0% identity		Open · Scan
M08397_2.00	NN 70-40%	CisBP	ATGCAACAGGTG	50.0% identity		Open · Scan
M08955_2.00	NN 70-40%	CisBP	GATCCTCCCGCCTCAGCCTCCC	50.0% identity		Open · Scan
MA0743.1	NN 70-40%	JASPAR	GAGCAACAGGTGGTT	50.0% identity		Open · Scan
MA1125.1	NN 70-40%	JASPAR	TTTAAAAAAAAA	50.0% identity		Open · Scan

ModCRE5

Motif	Prediction	Source	DNA binding	Support	Logo	Actions
TFS_tr_Q13580_Q13580_HUMAN:2:109_5ei9_E_1	ModCRE	Homology model	CCGTGGCCCCTGGGCGG	Region 2-109 · 1 3D model		Open · Scan
TFS_tr_Q13580_Q13580_HUMAN:2:116_2i13_A_1	ModCRE	Homology model	TCTCACACGGAGTAGGATAAA	Region 2-116 · 1 3D model		Open · Scan
TFS_tr_Q13580_Q13580_HUMAN:2:118_5v3j_E_1	ModCRE	Homology model	GGCCCCGACGTCCCCG	Region 2-118 · 1 3D model		Open · Scan
TFS_tr_Q13580_Q13580_HUMAN:2:118_5v3m_C_1	ModCRE	Homology model	CGATGCCGCCGGCCCCC	Region 2-118 · 1 3D model		Open · Scan
TFS_tr_Q13580_Q13580_HUMAN:2:118_5wjq_D_1	ModCRE	Homology model	GCATCACGCAGTCCCCC	Region 2-118 · 1 3D model		Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 120 aa

2-118

Region 2-118 5 PWM

Residues

117 aa

Domains

PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type

3D models

6 active PDBs · 6 summary rows

Templates

1LLM, 2I13, 5EI9, 5V3J, 5V3M, 5WJQ

Sources

Predicted = Low

Scan this region Show models

3D Models

Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.

6 active PDB models 6 summary rows

Region 2-1186 models · 6 summary rows

Source ↕	Model ↕	Template ↕	Residues modeled ↕	Actions
Predicted = Low	DIMER_tr_Q13580_Q13580_HUMAN:2:51_1llm_D_1	1llm	2-51	View model · PDB
Predicted = Low	TFS_tr_Q13580_Q13580_HUMAN:2:109_5ei9_E_1	5ei9	2-109	View model · PDB
Predicted = Low	TFS_tr_Q13580_Q13580_HUMAN:2:116_2i13_A_1	2i13	2-116	View model · PDB
Predicted = Low	TFS_tr_Q13580_Q13580_HUMAN:2:118_5v3j_E_1	5v3j	2-118	View model · PDB
Predicted = Low	TFS_tr_Q13580_Q13580_HUMAN:2:118_5v3m_C_1	5v3m	2-118	View model · PDB
Predicted = Low	TFS_tr_Q13580_Q13580_HUMAN:2:118_5wjq_D_1	5wjq	2-118	View model · PDB

Model-summary evidence imported for this region.

Rank	Template	Domain	N-tails	C-tails	Chains	Identity / similarity	Coverage	Model file
4	2i13	1:118	2	116	P:A · DNA:C,D	50.4% / 63.5%	76	View · PDB TFS_tr_Q13580_Q13580_HUMAN:2:116_2i13_A_1
1	5wjq	1:118	2	118	P:D · DNA:A,B	49.6% / 69.2%	41	View · PDB TFS_tr_Q13580_Q13580_HUMAN:2:118_5wjq_D_1
2	5v3m	1:118	2	118	P:C · DNA:A,B	49.6% / 69.2%	42	View · PDB TFS_tr_Q13580_Q13580_HUMAN:2:118_5v3m_C_1
3	5v3j	1:118	2	118	P:E · DNA:A,B	49.6% / 69.2%	42	View · PDB TFS_tr_Q13580_Q13580_HUMAN:2:118_5v3j_E_1
5	5ei9	1:118	2	109	P:E · DNA:A,B	46.3% / 61.1%	97	View · PDB TFS_tr_Q13580_Q13580_HUMAN:2:109_5ei9_E_1
1	1llm	1:118	2,2	51,51	P:C,D · DNA:A,B	34.0% / 64.0%	57,58	View · PDB DIMER_tr_Q13580_Q13580_HUMAN:2:51_1llm_D_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

Residues	PFAM	Domain	Used by prediction region?
2-24	PF00096	Zinc finger, C2H2 type	overlaps 2-118
30-52	PF00096	Zinc finger, C2H2 type	overlaps 2-118
86-108	PF00096	Zinc finger, C2H2 type	overlaps 2-118