ModCRE DB

Transcription factor

Q13582 - kr-znf3

KR-ZNF3

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 81 aa

153 Generated PWM 7 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)152
MotifPredictionSourceDNA bindingSupportLogoActions
M07590_2.00 NN 70-40% CisBP TTTTTTTCTTTTATTTTTTTTTTTTTTTTTTTT 69.2% identity Open · Scan
M08256_2.00 NN 70-40% CisBP GTGCCTT 67.6% identity Open · Scan
M08347_2.00 NN 70-40% CisBP GCCCTGGGCAGC 67.1% identity Open · Scan
M07689_2.00 NN 70-40% CisBP ACCCAGGCTCCTTCCATCTTGTGGCTC 66.1% identity Open · Scan
M08292_2.00 NN 70-40% CisBP TGTATTCCTTGTCATGTGTGG 66.1% identity Open · Scan
M08944_2.00 NN 70-40% CisBP TACCATGCTGTTTTGATTAC 65.0% identity Open · Scan
M07635_2.00 NN 70-40% CisBP AAGTTTTCTTGTATTATATCT 64.6% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 63.6% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 63.6% identity Open · Scan
M08392_2.00 NN 70-40% CisBP CTTCACCTGCTGAGG 63.6% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 63.3% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 63.0% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 63.0% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 63.0% identity Open · Scan
M04475_2.00 NN 70-40% CisBP GATGCACGTACCGTGCCTCA 63.0% identity Open · Scan
M08252_2.00 NN 70-40% CisBP CCGGCTCCAGCACCC 63.0% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 63.0% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 63.0% identity Open · Scan
M08386_2.00 NN 70-40% CisBP GCCTTAAAAGCTCAGCAC 63.0% identity Open · Scan
M08887_2.00 NN 70-40% CisBP CCTCCTCCAGGAAGCCTTCCCTGA 63.0% identity Open · Scan
MA1652.1 NN 70-40% JASPAR GGAGGAGGTGAGAA 63.0% identity Open · Scan
M07598_2.00 NN 70-40% CisBP CTGACAATACCAAGTGTTGAC 62.6% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 62.6% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 62.5% identity Open · Scan
M04610_2.00 NN 70-40% CisBP CGGCGACGCGAACAC 62.1% identity Open · Scan
M07686_2.00 NN 70-40% CisBP TAGCTTGTTTCCAGCCAC 62.1% identity Open · Scan
M08255_2.00 NN 70-40% CisBP CTCTTCCGGT 62.1% identity Open · Scan
MA1587.1 NN 70-40% JASPAR CCTCGACCTCCTGA 62.1% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 61.5% identity Open · Scan
M07684_2.00 NN 70-40% CisBP CCTGTTCTTGACTTT 61.5% identity Open · Scan
M07699_2.00 NN 70-40% CisBP GGTTTAT 61.5% identity Open · Scan
M07729_2.00 NN 70-40% CisBP CCAGACTGCCTGCCAAAACCCCCT 61.5% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 61.5% identity Open · Scan
M00149_2.00 NN 70-40% CisBP CGTACGCC 61.1% identity Open · Scan
M07605_2.00 NN 70-40% CisBP TATTTTTTTTTATTTTTTTTTTTTTTTTTT 61.1% identity Open · Scan
M07700_2.00 NN 70-40% CisBP ATGTTGTGAGGAAGCCCA 61.1% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 61.0% identity Open · Scan
M08311_2.00 NN 70-40% CisBP CTGGAACAGAAGGGGCGA 60.9% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 60.9% identity Open · Scan
M08934_2.00 NN 70-40% CisBP GCTGTACCTGCTTATTAGGC 60.6% identity Open · Scan
M00764_2.00 NN 70-40% CisBP GTCTACAC 60.0% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 60.0% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 60.0% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 60.0% identity Open · Scan
M05853_2.00 NN 70-40% CisBP CCACCTTTAGCCATATCT 60.0% identity Open · Scan
M07666_2.00 NN 70-40% CisBP ATCTAGCCCCTGCCTACC 60.0% identity Open · Scan
M08358_2.00 NN 70-40% CisBP CCCTCCCCCTCC 60.0% identity Open · Scan
M07648_2.00 NN 70-40% CisBP GCTTGCAAAAAAAATTTAACTCCCAGCTC 59.7% identity Open · Scan
M07649_2.00 NN 70-40% CisBP CCCCCCCCCCCCTCAGGAATGCC 59.3% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 59.0% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 59.0% identity Open · Scan
M07727_2.00 NN 70-40% CisBP CGCCGCCTCCCC 59.0% identity Open · Scan
M08247_2.00 NN 70-40% CisBP AAAAATAACAAACGG 59.0% identity Open · Scan
MA1594.1 NN 70-40% JASPAR AGGGGACATCACTACAGATCCCAC 59.0% identity Open · Scan
MA1596.1 NN 70-40% JASPAR GCCTCAGCCTCCCGAG 59.0% identity Open · Scan
M07720_2.00 NN 70-40% CisBP TGTGTGTGTGGGCATGTGTGTGTGCGAGT 58.6% identity Open · Scan
M08245_2.00 NN 70-40% CisBP TGGTGCCTTATTCCC 58.5% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 58.5% identity Open · Scan
M00785_2.00 NN 70-40% CisBP TTCACTTCCT 58.4% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 58.4% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 58.4% identity Open · Scan
M05855_2.00 NN 70-40% CisBP GTATTATACCCAGCT 58.4% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 58.4% identity Open · Scan
M07646_2.00 NN 70-40% CisBP CTTTTTTTT 58.4% identity Open · Scan
M07667_2.00 NN 70-40% CisBP CCGCACAGGCCCCCGGGCCCC 58.4% identity Open · Scan
M07706_2.00 NN 70-40% CisBP GTCTTTGAGAGGGCCCAGATGTTGGACTTA 58.4% identity Open · Scan
M07712_2.00 NN 70-40% CisBP ACATTTTTTTAATCTAAAAAAACATTTACA 58.4% identity Open · Scan
M07746_2.00 NN 70-40% CisBP CAGCTGGCGCCCAACATGGGTCCC 58.4% identity Open · Scan
M08335_2.00 NN 70-40% CisBP AGTCGTTGTCTG 58.4% identity Open · Scan
M07625_2.00 NN 70-40% CisBP TCTCTCTCTCTCTCTCTCTCTCTCTCTCTC 58.3% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 58.2% identity Open · Scan
M08309_2.00 NN 70-40% CisBP AAAAACCCCCCTGCAGAGCCCAGCCCT 57.5% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 57.5% identity Open · Scan
M07740_2.00 NN 70-40% CisBP TCCTGATTCCACACTCAAACATAACTTT 57.3% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 57.1% identity Open · Scan
MA0528.1 NN 70-40% JASPAR GGAGGAGGAGGGGGAGGAGGA 57.1% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 56.9% identity Open · Scan
M07761_2.00 NN 70-40% CisBP CTGATTATTCACCCA 56.9% identity Open · Scan
M08274_2.00 NN 70-40% CisBP TTACTTGCAGCCCAACGCATTCCTAAC 56.9% identity Open · Scan
M08373_2.00 NN 70-40% CisBP CCCCCTGGCTCTTCCTCT 56.9% identity Open · Scan
M08399_2.00 NN 70-40% CisBP TACTCTGGGGCCACATGACTC 56.9% identity Open · Scan
M07562_2.00 NN 70-40% CisBP GAAAAAAAC 56.0% identity Open · Scan
M07566_2.00 NN 70-40% CisBP TCAAACCATCCTTGC 56.0% identity Open · Scan
M07703_2.00 NN 70-40% CisBP CCGACGG 55.9% identity Open · Scan
M08300_2.00 NN 70-40% CisBP CTGCCCAATTCAT 55.5% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 55.3% identity Open · Scan
M04505_2.00 NN 70-40% CisBP AGCTTTTCCCACAC 55.3% identity Open · Scan
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 55.3% identity Open · Scan
M07579_2.00 NN 70-40% CisBP CATCTCCAGGA 55.3% identity Open · Scan
M07660_2.00 NN 70-40% CisBP CCGCGCCTACCTGAGGGCGCGGGCCTGGGG 55.3% identity Open · Scan
M07691_2.00 NN 70-40% CisBP CCTGCAGCCACCTTGGCCTTG 55.3% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 55.3% identity Open · Scan
MA0056.1 NN 70-40% JASPAR TGGGGA 55.3% identity Open · Scan
M08860_2.00 NN 70-40% CisBP TCTTATAAGGGCACTAATCCCATT 55.2% identity Open · Scan
M06120_2.00 NN 70-40% CisBP TCATTCACA 55.1% identity Open · Scan
M07650_2.00 NN 70-40% CisBP GGTCTATAAAAGGGGGGCCGCGGGGGGG 55.1% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 54.5% identity Open · Scan
MA1589.1 NN 70-40% JASPAR TAGGAGTGGAATTGCTGGGTC 54.5% identity Open · Scan
M07717_2.00 NN 70-40% CisBP GGCTCCGCCCCC 54.2% identity Open · Scan
M08917_2.00 NN 70-40% CisBP GCTGAGCCATGTGGGGTGCT 54.2% identity Open · Scan
MA1600.1 NN 70-40% JASPAR ATACAGTCCACCCCTTTA 54.2% identity Open · Scan
M06084_2.00 NN 70-40% CisBP AGACCACCCAC 53.8% identity Open · Scan
M07582_2.00 NN 70-40% CisBP TCCCTG 53.8% identity Open · Scan
M07588_2.00 NN 70-40% CisBP TCCTTCCCTCTTTCC 53.8% identity Open · Scan
M07600_2.00 NN 70-40% CisBP GCATTAGC 53.8% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 53.8% identity Open · Scan
M08239_2.00 NN 70-40% CisBP GGGCCGCTCTAGGCTGCCGG 53.8% identity Open · Scan
M08291_2.00 NN 70-40% CisBP AATCCAGCCCTAGACTCTCCC 53.8% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 53.8% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 53.8% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 53.8% identity Open · Scan
MA1588.1 NN 70-40% JASPAR GAATTCTTGGTTGAC 53.7% identity Open · Scan
M04595_2.00 NN 70-40% CisBP GTTTCCGGTAAC 53.4% identity Open · Scan
M07731_2.00 NN 70-40% CisBP TTTCCCAGCAGCAACAGCACCGCCCCCCCC 53.3% identity Open · Scan
M07758_2.00 NN 70-40% CisBP CGCCCTC 53.3% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 53.1% identity Open · Scan
M06179_2.00 NN 70-40% CisBP TAAGCCTATAGA 53.1% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 53.0% identity Open · Scan
M07678_2.00 NN 70-40% CisBP CCCGCCCCCTCCTCCCCCTTCCCACCC 52.8% identity Open · Scan
M08279_2.00 NN 70-40% CisBP CCTCCCTCC 52.8% identity Open · Scan
M07631_2.00 NN 70-40% CisBP AATTTCAAAAATGCTATGGGC 52.5% identity Open · Scan
M07674_2.00 NN 70-40% CisBP AAATCCTTGACAATCAAGGGTTCCCTCAC 52.4% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 52.3% identity Open · Scan
M00250_2.00 NN 70-40% CisBP AATGCTAACT 52.2% identity Open · Scan
M00775_2.00 NN 70-40% CisBP GTCCCGCAAC 52.2% identity Open · Scan
M00786_2.00 NN 70-40% CisBP TATATATAT 52.2% identity Open · Scan
M04536_2.00 NN 70-40% CisBP ACGTAACCCGATACC 52.2% identity Open · Scan
M07593_2.00 NN 70-40% CisBP AGATGAAGTCACCCCTCTTAC 52.2% identity Open · Scan
M08320_2.00 NN 70-40% CisBP TTCCCTGCC 51.7% identity Open · Scan
M01022_2.00 NN 70-40% CisBP GGACCACCCAC 51.6% identity Open · Scan
M00609_2.00 NN 70-40% CisBP GGAAGCCCTA 51.5% identity Open · Scan
M07601_2.00 NN 70-40% CisBP CAGATGCCGGCACCATGCTTC 51.5% identity Open · Scan
M07645_2.00 NN 70-40% CisBP CTCCTT 51.5% identity Open · Scan
MA1154.1 NN 70-40% JASPAR CTTTCCCACAACACGAC 50.8% identity Open · Scan
M01457_2.00 NN 70-40% CisBP GCGCACGGAC 50.7% identity Open · Scan
M07607_2.00 NN 70-40% CisBP GGCTCCACG 50.7% identity Open · Scan
M07610_2.00 NN 70-40% CisBP CCTTCTTCCTCCCCCCTGCCCACC 50.7% identity Open · Scan
M08357_2.00 NN 70-40% CisBP GAGCCTGCTACTGAGCCTGGG 50.7% identity Open · Scan
M08366_2.00 NN 70-40% CisBP GTTTGCTGCTTACAA 50.7% identity Open · Scan
M00021_2.00 NN 70-40% CisBP TACCCCACAC 50.0% identity Open · Scan
M00217_2.00 NN 70-40% CisBP TTACTCAATAT 50.0% identity Open · Scan
M00613_2.00 NN 70-40% CisBP TTTTTTTC 50.0% identity Open · Scan
M06072_2.00 NN 70-40% CisBP CCACGCCCACGCAC 50.0% identity Open · Scan
M09515_2.00 NN 70-40% CisBP CCCGCCCACGCA 50.0% identity Open · Scan
M10303_2.00 NN 70-40% CisBP TACTGGGAATACC 50.0% identity Open · Scan
MA0162.1 NN 70-40% JASPAR TGCGTGGGCGG 50.0% identity Open · Scan
MA0162.2 NN 70-40% JASPAR CCCCCGCCCCCGCC 50.0% identity Open · Scan
MA0472.1 NN 70-40% JASPAR CCCCCGCCCACGCAC 50.0% identity Open · Scan
MA0472.2 NN 70-40% JASPAR ACGCCCACGCA 50.0% identity Open · Scan
MA1508.1 NN 70-40% JASPAR GAAACAGGAAGT 50.0% identity Open · Scan
MA1580.1 NN 70-40% JASPAR TGTACAGTAT 50.0% identity Open · Scan
MA1653.1 NN 70-40% JASPAR CCCCCCTCCCCC 50.0% identity Open · Scan
ModCRE1
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_Q13582_Q13582_HUMAN:1:73_5keb_A_1 ModCRE Homology model TGGGGGGTGG Region 1-73 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 81 aa
1-73

Region 1-73 1 PWM

Residues
73 aa
Domains
PF13465 · Zinc-finger double domain PF00096 · Zinc finger, C2H2 type
3D models
7 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5EGB, 5EH2, 5EI9, 5KEB, 5WJQ
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
7 active PDB models 6 summary rows
Region 1-737 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_Q13582_Q13582_HUMAN:20:62_1llm_D_1 1llm 20-62 View model · PDB
Predicted = Low TFS_tr_Q13582_Q13582_HUMAN:1:65_2i13_A_1 2i13 1-65 View model · PDB
Predicted = Low TFS_tr_Q13582_Q13582_HUMAN:1:65_5egb_A_1 5egb 1-65 View model · PDB
Predicted = Low TFS_tr_Q13582_Q13582_HUMAN:1:65_5eh2_F_1 5eh2 1-65 View model · PDB
Predicted = Low TFS_tr_Q13582_Q13582_HUMAN:1:65_5ei9_E_1 5ei9 1-65 View model · PDB
Predicted = Low TFS_tr_Q13582_Q13582_HUMAN:1:66_5wjq_D_1 5wjq 1-66 View model · PDB
Predicted = Low TFS_tr_Q13582_Q13582_HUMAN:1:73_5keb_A_1 5keb 1-73 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 2i13 1:73 1 65 P:A · DNA:C,D 63.1% / 75.4% 43 View · PDB TFS_tr_Q13582_Q13582_HUMAN:1:65_2i13_A_1
5 5wjq 1:73 1 66 P:D · DNA:A,B 56.1% / 68.2% 23 View · PDB TFS_tr_Q13582_Q13582_HUMAN:1:66_5wjq_D_1
2 5eh2 1:73 1 65 P:F · DNA:C,D 50.8% / 70.8% 59 View · PDB TFS_tr_Q13582_Q13582_HUMAN:1:65_5eh2_F_1
3 5ei9 1:73 1 65 P:E · DNA:A,B 50.8% / 70.8% 58 View · PDB TFS_tr_Q13582_Q13582_HUMAN:1:65_5ei9_E_1
4 5egb 1:73 1 65 P:A · DNA:C,D 50.8% / 70.8% 58 View · PDB TFS_tr_Q13582_Q13582_HUMAN:1:65_5egb_A_1
1 1llm 1:73 20,20 62,62 P:C,D · DNA:A,B 48.8% / 60.5% 49,50 View · PDB DIMER_tr_Q13582_Q13582_HUMAN:20:62_1llm_D_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
8-33PF13465Zinc-finger double domainoverlaps 1-73
50-66PF00096Zinc finger, C2H2 typeoverlaps 1-73