Region 191-225 4 PWM
- Residues
- 35 aa
- Domains
- PF00076 · RNA recognition motif
- 3D models
- 4 active PDBs · 4 summary rows
- Templates
- 6ZHE, 7NFC, 8BHY
- Sources
- Predicted = Low
Transcription factor
Q14103 - HNRNPD
Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0) (AU-rich element RNA-binding protein 1)
Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 355 aa
Motif Prediction
Only entries with a generated matrix are shown here.
Known0
No generated PWM in this category.
Nearest Neighbor (>70%)0
No generated PWM in this category.
Nearest Neighbor (70% - 40%)0
No generated PWM in this category.
ModCRE4
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| TFS_sp_Q14103_HNRPD_HUMAN:191:225_6zhe_A_1 | ModCRE | Homology model | AATAA | Region 191-225 · 1 3D model | Open · Scan | |
| TFS_sp_Q14103_HNRPD_HUMAN:191:225_6zhe_F_1 | ModCRE | Homology model | GGATTTC | Region 191-225 · 1 3D model | Open · Scan | |
| TFS_sp_Q14103_HNRPD_HUMAN:191:225_7nfc_F_1 | ModCRE | Homology model | TTTTTTT | Region 191-225 · 1 3D model | Open · Scan | |
| TFS_sp_Q14103_HNRPD_HUMAN:191:225_8bhy_S_1 | ModCRE | Homology model | GAACT | Region 191-225 · 1 3D model | Open · Scan |
Model-supported DNA-binding regions
Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.
1
355 aa
191-225
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
4 active PDB models
4 summary rows
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
Region 191-2254 models · 4 summary rows
| Actions | ||||
|---|---|---|---|---|
| Predicted = Low | TFS_sp_Q14103_HNRPD_HUMAN:191:225_6zhe_A_1 | 6zhe | 191-225 | View model · PDB |
| Predicted = Low | TFS_sp_Q14103_HNRPD_HUMAN:191:225_6zhe_F_1 | 6zhe | 191-225 | View model · PDB |
| Predicted = Low | TFS_sp_Q14103_HNRPD_HUMAN:191:225_7nfc_F_1 | 7nfc | 191-225 | View model · PDB |
| Predicted = Low | TFS_sp_Q14103_HNRPD_HUMAN:191:225_8bhy_S_1 | 8bhy | 191-225 | View model · PDB |
Model-summary evidence imported for this region.
| Rank | Template | Domain | N-tails | C-tails | Chains | Identity / similarity | Coverage | Model file |
|---|---|---|---|---|---|---|---|---|
| 1 | 7nfc | 131:196 | 191 | 225 | P:F · DNA:I,J | 42.9% / 54.3% | 0 | View · PDB TFS_sp_Q14103_HNRPD_HUMAN:191:225_7nfc_F_1 |
| 2 | 6zhe | 131:196 | 191 | 225 | P:F · DNA:I,J | 42.9% / 54.3% | 0 | View · PDB TFS_sp_Q14103_HNRPD_HUMAN:191:225_6zhe_F_1 |
| 3 | 6zhe | 131:196 | 191 | 225 | P:A · DNA:D,E | 42.9% / 54.3% | 0 | View · PDB TFS_sp_Q14103_HNRPD_HUMAN:191:225_6zhe_A_1 |
| 4 | 8bhy | 131:196 | 191 | 225 | P:S · DNA:i,j | 42.9% / 54.3% | 0 | View · PDB TFS_sp_Q14103_HNRPD_HUMAN:191:225_8bhy_S_1 |
View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.
Domains
Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.
| Residues | PFAM | Domain | Used by prediction region? |
|---|---|---|---|
| 1-78 | PF08143 | CBFNT (NUC161) domain | No overlap with loaded model regions |
| 100-167 | PF00076 | RNA recognition motif | No overlap with loaded model regions |
| 184-243 | PF00076 | RNA recognition motif | overlaps 191-225 |