ModCRE DB

Transcription factor

Q14588 - ZNF234

Zinc finger protein 234 (Zinc finger protein 269) (Zinc finger protein HZF4)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 700 aa

65 Generated PWM 7 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)59
MotifPredictionSourceDNA bindingSupportLogoActions
M00944_2.00 NN 70-40% CisBP TCGCTATAA 69.4% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 69.4% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 68.2% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 68.2% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 67.0% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 67.0% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 67.0% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 65.8% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 65.8% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 63.5% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 62.6% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 62.2% identity Open · Scan
M08399_2.00 NN 70-40% CisBP TACTCTGGGGCCACATGACTC 61.6% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 61.0% identity Open · Scan
M07654_2.00 NN 70-40% CisBP TGCCCCCTGGTGGC 60.8% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 60.6% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 60.0% identity Open · Scan
M07679_2.00 NN 70-40% CisBP TGCGATCTC 58.1% identity Open · Scan
M08887_2.00 NN 70-40% CisBP CCTCCTCCAGGAAGCCTTCCCTGA 58.1% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 57.4% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 57.0% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 56.8% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 56.5% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 56.4% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 55.7% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 55.6% identity Open · Scan
M07579_2.00 NN 70-40% CisBP CATCTCCAGGA 55.6% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 55.5% identity Open · Scan
MA1154.1 NN 70-40% JASPAR CTTTCCCACAACACGAC 55.4% identity Open · Scan
M04505_2.00 NN 70-40% CisBP AGCTTTTCCCACAC 55.1% identity Open · Scan
M07649_2.00 NN 70-40% CisBP CCCCCCCCCCCCTCAGGAATGCC 54.8% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 54.4% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 54.4% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 54.2% identity Open · Scan
MA1599.1 NN 70-40% JASPAR CGGGCCAAGCCCCTAT 54.1% identity Open · Scan
M08309_2.00 NN 70-40% CisBP AAAAACCCCCCTGCAGAGCCCAGCCCT 53.6% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 53.4% identity Open · Scan
M07562_2.00 NN 70-40% CisBP GAAAAAAAC 53.2% identity Open · Scan
M07648_2.00 NN 70-40% CisBP GCTTGCAAAAAAAATTTAACTCCCAGCTC 53.2% identity Open · Scan
M01456_2.00 NN 70-40% CisBP GTGATCGGCG 52.8% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 52.6% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 52.6% identity Open · Scan
M08373_2.00 NN 70-40% CisBP CCCCCTGGCTCTTCCTCT 51.9% identity Open · Scan
M04536_2.00 NN 70-40% CisBP ACGTAACCCGATACC 51.8% identity Open · Scan
M00142_2.00 NN 70-40% CisBP GTGCTCCT 51.7% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 51.7% identity Open · Scan
M07618_2.00 NN 70-40% CisBP CCTTTGGTGCTC 51.7% identity Open · Scan
M08245_2.00 NN 70-40% CisBP TGGTGCCTTATTCCC 51.7% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 51.7% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 51.6% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 51.5% identity Open · Scan
M05853_2.00 NN 70-40% CisBP CCACCTTTAGCCATATCT 51.5% identity Open · Scan
M06112_2.00 NN 70-40% CisBP CTACTTTCACCGGGG 51.0% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 50.9% identity Open · Scan
M07605_2.00 NN 70-40% CisBP TATTTTTTTTTATTTTTTTTTTTTTTTTTT 50.3% identity Open · Scan
M06179_2.00 NN 70-40% CisBP TAAGCCTATAGA 50.0% identity Open · Scan
M07566_2.00 NN 70-40% CisBP TCAAACCATCCTTGC 50.0% identity Open · Scan
M08859_2.00 NN 70-40% CisBP CATTTTTTCCTCCTAGGCCT 50.0% identity Open · Scan
MA0528.1 NN 70-40% JASPAR GGAGGAGGAGGGGGAGGAGGA 50.0% identity Open · Scan
ModCRE6
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_sp_Q14588_ZN234_HUMAN:510:561_1llm_D_1 ModCRE Homology model GTCGGCGCGCGA Region 510-561 · 1 3D model Open · Scan
TFS_sp_Q14588_ZN234_HUMAN:229:507_5wjq_D_1 ModCRE Homology model GGGGGCGGTGGGGTGAACGGAGTGCCGA Region 229-507 · 1 3D model Open · Scan
TFS_sp_Q14588_ZN234_HUMAN:343:619_5v3j_E_1 ModCRE Homology model TAAATTCCCACCCCCGTCCCCGAACC Region 343-619 · 1 3D model Open · Scan
TFS_sp_Q14588_ZN234_HUMAN:343:619_5v3m_C_1 ModCRE Homology model AGGGCCGGTCGGGGGGGCGGGGTTTC Region 343-619 · 1 3D model Open · Scan
TFS_sp_Q14588_ZN234_HUMAN:465:618_2i13_A_1 ModCRE Homology model ATGAAGTAGGTACTTTTAGAT Region 465-618 · 1 3D model Open · Scan
TFS_sp_Q14588_ZN234_HUMAN:509:619_5ei9_E_1 ModCRE Homology model TTAGGAGCCCAGCGGCC Region 509-619 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 700 aa
229-619

Region 229-619 6 PWM

Residues
391 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
7 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5EI9, 5V3J, 5V3M, 5WJQ, 7W1M
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
7 active PDB models 6 summary rows
Region 229-6197 models · 6 summary rows
Actions
Predicted = Low DIMER_sp_Q14588_ZN234_HUMAN:510:561_1llm_D_1 1llm 510-561 View model · PDB
Predicted = Low TFS_sp_Q14588_ZN234_HUMAN:229:507_5wjq_D_1 5wjq 229-507 View model · PDB
Predicted = Low TFS_sp_Q14588_ZN234_HUMAN:316:614_7w1m_H_1 7w1m 316-614 View model · PDB
Predicted = Low TFS_sp_Q14588_ZN234_HUMAN:343:619_5v3j_E_1 5v3j 343-619 View model · PDB
Predicted = Low TFS_sp_Q14588_ZN234_HUMAN:343:619_5v3m_C_1 5v3m 343-619 View model · PDB
Predicted = Low TFS_sp_Q14588_ZN234_HUMAN:465:618_2i13_A_1 2i13 465-618 View model · PDB
Predicted = Low TFS_sp_Q14588_ZN234_HUMAN:509:619_5ei9_E_1 5ei9 509-619 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
4 2i13 179:674 465 618 P:A · DNA:C,D 62.3% / 70.8% 100 View · PDB TFS_sp_Q14588_ZN234_HUMAN:465:618_2i13_A_1
1 5wjq 179:674 229 507 P:D · DNA:A,B 53.4% / 68.8% 99 View · PDB TFS_sp_Q14588_ZN234_HUMAN:229:507_5wjq_D_1
2 5v3m 179:674 343 619 P:C · DNA:A,B 52.3% / 69.0% 100 View · PDB TFS_sp_Q14588_ZN234_HUMAN:343:619_5v3m_C_1
3 5v3j 179:674 343 619 P:E · DNA:A,B 52.3% / 69.0% 100 View · PDB TFS_sp_Q14588_ZN234_HUMAN:343:619_5v3j_E_1
1 1llm 179:674 510,510 561,561 P:C,D · DNA:A,B 46.2% / 67.3% 59,61 View · PDB DIMER_sp_Q14588_ZN234_HUMAN:510:561_1llm_D_1
5 7w1m 179:674 316 614 P:H · DNA:F,G 34.7% / 52.3% 92 View · PDB TFS_sp_Q14588_ZN234_HUMAN:316:614_7w1m_H_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
8-48PF01352KRAB boxNo overlap with loaded model regions
176-198PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
204-226PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
232-254PF00096Zinc finger, C2H2 typeoverlaps 229-619
260-282PF00096Zinc finger, C2H2 typeoverlaps 229-619
288-310PF00096Zinc finger, C2H2 typeoverlaps 229-619
316-338PF00096Zinc finger, C2H2 typeoverlaps 229-619
344-366PF00096Zinc finger, C2H2 typeoverlaps 229-619
372-394PF00096Zinc finger, C2H2 typeoverlaps 229-619
400-422PF00096Zinc finger, C2H2 typeoverlaps 229-619
428-450PF00096Zinc finger, C2H2 typeoverlaps 229-619
456-478PF00096Zinc finger, C2H2 typeoverlaps 229-619
484-506PF00096Zinc finger, C2H2 typeoverlaps 229-619
512-534PF00096Zinc finger, C2H2 typeoverlaps 229-619
540-562PF00096Zinc finger, C2H2 typeoverlaps 229-619
568-590PF00096Zinc finger, C2H2 typeoverlaps 229-619
596-618PF00096Zinc finger, C2H2 typeoverlaps 229-619
624-646PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
652-674PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions