ModCRE DB

Transcription factor

Q14DW8 - HOXD11

HOXD11 protein

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 159 aa

97 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)3
MotifPredictionSourceDNA bindingSupportLogoActions
MA0651.1 NN 70+% JASPAR GGTCGTAAAAT 93.1% identity Open · Scan
M00474_2.00 NN 70+% CisBP TTTATGACC 91.8% identity Open · Scan
MA0911.1 NN 70+% JASPAR GGTCGTAAAATT 91.8% identity Open · Scan
Nearest Neighbor (70% - 40%)94
MotifPredictionSourceDNA bindingSupportLogoActions
M03775_2.00 NN 70-40% CisBP GTTTTATGTGTTTT 68.4% identity Open · Scan
M02196_2.00 NN 70-40% CisBP TTAATTAC 68.3% identity Open · Scan
MA0594.1 NN 70-40% JASPAR GCCATAAATCA 67.7% identity Open · Scan
MA0594.2 NN 70-40% JASPAR GTCGTAAACG 67.7% identity Open · Scan
M00410_2.00 NN 70-40% CisBP TTTTATGACC 66.1% identity Open · Scan
MA0485.1 NN 70-40% JASPAR GGCCATAAATCAC 66.1% identity Open · Scan
MA0485.2 NN 70-40% JASPAR GTCGTAAAAT 66.1% identity Open · Scan
MA1503.1 NN 70-40% JASPAR GTCGTAAAAT 66.1% identity Open · Scan
M03253_2.00 NN 70-40% CisBP TTTTTATTAC 65.7% identity Open · Scan
M05394_2.00 NN 70-40% CisBP GGTCGTAAAAC 65.7% identity Open · Scan
M09170_2.00 NN 70-40% CisBP TCATAAATCATC 65.7% identity Open · Scan
MA0899.1 NN 70-40% JASPAR GGTAATAAAAA 65.7% identity Open · Scan
MA0905.1 NN 70-40% JASPAR GTCGTAAAAT 65.7% identity Open · Scan
M00538_2.00 NN 70-40% CisBP TTTTATGACC 65.6% identity Open · Scan
MA0873.1 NN 70-40% JASPAR AGTCGTAAAAA 65.6% identity Open · Scan
M05105_2.00 NN 70-40% CisBP GTCGTAAAAT 64.5% identity Open · Scan
MA0913.1 NN 70-40% JASPAR GCAATAAAAA 64.5% identity Open · Scan
MA0913.2 NN 70-40% JASPAR GCAATAAAAC 64.5% identity Open · Scan
M00508_2.00 NN 70-40% CisBP TTTTATGACC 63.3% identity Open · Scan
MA0906.1 NN 70-40% JASPAR GGTCGTAAAAA 63.3% identity Open · Scan
MA1506.1 NN 70-40% JASPAR GGTCGTAAAAC 63.0% identity Open · Scan
M02205_2.00 NN 70-40% CisBP CATTAATTACC 62.0% identity Open · Scan
MA0907.1 NN 70-40% JASPAR GCTCGTAAAAA 60.0% identity Open · Scan
MA0909.1 NN 70-40% JASPAR CCAATAAAAA 60.0% identity Open · Scan
M02166_2.00 NN 70-40% CisBP CTAATTAC 59.3% identity Open · Scan
M00505_2.00 NN 70-40% CisBP TTTTATGAGC 58.3% identity Open · Scan
MA0650.1 NN 70-40% JASPAR CCAATAAAAA 58.2% identity Open · Scan
MA1502.1 NN 70-40% JASPAR GCAATTAC 57.6% identity Open · Scan
MA0901.1 NN 70-40% JASPAR CCAATAAAAC 56.9% identity Open · Scan
M06549_2.00 NN 70-40% CisBP TTAATGA 56.1% identity Open · Scan
M05312_2.00 NN 70-40% CisBP TTAACGAC 55.9% identity Open · Scan
M00391_2.00 NN 70-40% CisBP TTAATTGCC 55.7% identity Open · Scan
MA0132.1 NN 70-40% JASPAR CTAATT 55.7% identity Open · Scan
MA1505.1 NN 70-40% JASPAR GTAATTAC 55.7% identity Open · Scan
MA0910.1 NN 70-40% JASPAR TAAATAATTAATGGCTA 55.3% identity Open · Scan
MA0910.2 NN 70-40% JASPAR GCAATTAC 55.3% identity Open · Scan
M00532_2.00 NN 70-40% CisBP TTAATGACC 55.1% identity Open · Scan
M01245_2.00 NN 70-40% CisBP TTTTATTACC 55.1% identity Open · Scan
M06248_2.00 NN 70-40% CisBP TAATTGCC 55.1% identity Open · Scan
MA0912.1 NN 70-40% JASPAR TTGAGTTAATTAACCT 55.1% identity Open · Scan
MA0912.2 NN 70-40% JASPAR CTAATTAC 55.1% identity Open · Scan
MA1498.1 NN 70-40% JASPAR GCAATTAC 55.1% identity Open · Scan
MA0132.2 NN 70-40% JASPAR GTAATTAG 54.6% identity Open · Scan
M00392_2.00 NN 70-40% CisBP TTAATTAC 54.3% identity Open · Scan
M03799_2.00 NN 70-40% CisBP GTAATTAC 54.3% identity Open · Scan
M09206_2.00 NN 70-40% CisBP CATTAATCAA 54.3% identity Open · Scan
M09680_2.00 NN 70-40% CisBP TTAATTA 54.3% identity Open · Scan
MA0158.1 NN 70-40% JASPAR CACTAATT 54.3% identity Open · Scan
MA0904.1 NN 70-40% JASPAR ACGGTAATTAGCTCAT 54.3% identity Open · Scan
MA0904.2 NN 70-40% JASPAR GTAATTAC 54.3% identity Open · Scan
MA1500.1 NN 70-40% JASPAR TTAATTAC 54.3% identity Open · Scan
MA1501.1 NN 70-40% JASPAR GGTAATTAAC 54.3% identity Open · Scan
M02150_2.00 NN 70-40% CisBP TTAATTAA 53.7% identity Open · Scan
M02081_2.00 NN 70-40% CisBP TTTTATTA 53.6% identity Open · Scan
M00403_2.00 NN 70-40% CisBP CTAATTACC 53.4% identity Open · Scan
M03104_2.00 NN 70-40% CisBP TTAATTACGGTAATTAC 53.4% identity Open · Scan
M03271_2.00 NN 70-40% CisBP GTAATTAC 53.4% identity Open · Scan
MA0706.1 NN 70-40% JASPAR AGTAATTAAC 53.4% identity Open · Scan
MA0900.1 NN 70-40% JASPAR CCTAATTACC 53.4% identity Open · Scan
M06929_2.00 NN 70-40% CisBP TAAATGATTAA 53.1% identity Open · Scan
M00422_2.00 NN 70-40% CisBP TTAATGA 52.6% identity Open · Scan
M06545_2.00 NN 70-40% CisBP TTAATTA 52.6% identity Open · Scan
MA1496.1 NN 70-40% JASPAR GTCATTAG 52.6% identity Open · Scan
M10761_2.00 NN 70-40% CisBP CATAAAT 52.4% identity Open · Scan
M00476_2.00 NN 70-40% CisBP TTAATGGCC 52.2% identity Open · Scan
M00494_2.00 NN 70-40% CisBP TTAATTACC 52.2% identity Open · Scan
MA1497.1 NN 70-40% JASPAR GGTAATTAAC 52.2% identity Open · Scan
M00469_2.00 NN 70-40% CisBP TTAATTACC 51.8% identity Open · Scan
M02211_2.00 NN 70-40% CisBP TTAATTAC 51.8% identity Open · Scan
M04959_2.00 NN 70-40% CisBP GTAATTAC 51.8% identity Open · Scan
M06261_2.00 NN 70-40% CisBP TTAATTA 51.8% identity Open · Scan
M09196_2.00 NN 70-40% CisBP TTGATGGATG 51.8% identity Open · Scan
MA0893.1 NN 70-40% JASPAR ACTAATTAAA 51.8% identity Open · Scan
MA1495.1 NN 70-40% JASPAR GTAATTAC 51.8% identity Open · Scan
M06281_2.00 NN 70-40% CisBP TTAATTA 51.6% identity Open · Scan
M02165_2.00 NN 70-40% CisBP CTTAATTGG 50.9% identity Open · Scan
M06489_2.00 NN 70-40% CisBP TTAATTA 50.9% identity Open · Scan
M02214_2.00 NN 70-40% CisBP AATAATTATA 50.8% identity Open · Scan
M05019_2.00 NN 70-40% CisBP GGTCGTAAAAC 50.8% identity Open · Scan
M09186_2.00 NN 70-40% CisBP ACATAAAT 50.8% identity Open · Scan
MA0465.1 NN 70-40% JASPAR AAGCCATAAAA 50.8% identity Open · Scan
MA0878.1 NN 70-40% JASPAR GCAATAAAA 50.8% identity Open · Scan
MA1507.1 NN 70-40% JASPAR ATCATTAG 50.8% identity Open · Scan
M00492_2.00 NN 70-40% CisBP TAATTAGC 50.0% identity Open · Scan
M02062_2.00 NN 70-40% CisBP TTAATGGGCT 50.0% identity Open · Scan
M05057_2.00 NN 70-40% CisBP TTAATTAC 50.0% identity Open · Scan
M05100_2.00 NN 70-40% CisBP TTAACGAC 50.0% identity Open · Scan
M05272_2.00 NN 70-40% CisBP TTAACGAG 50.0% identity Open · Scan
M06227_2.00 NN 70-40% CisBP TTAATTAT 50.0% identity Open · Scan
M08573_2.00 NN 70-40% CisBP AGTAATTA 50.0% identity Open · Scan
M09214_2.00 NN 70-40% CisBP GCATTAATCAA 50.0% identity Open · Scan
M09582_2.00 NN 70-40% CisBP ATGATTGATG 50.0% identity Open · Scan
MA0902.1 NN 70-40% JASPAR AGTAATTAAC 50.0% identity Open · Scan
MA0903.1 NN 70-40% JASPAR ACTAATTAGC 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 159 aa
88-144

Region 88-144 0 PWM

Residues
57 aa
Domains
PF00046 · Homeodomain
3D models
1 active PDB
Templates
5ZJR
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 88-1441 model
Actions
Predicted = Low DIMER_Q14DW8:88:144_5zjr_A_1 5zjr 88-144 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
13-39PF12045Protein of unknown function (DUF3528)No overlap with loaded model regions
88-144PF00046Homeodomainoverlaps 88-144