ModCRE DB

Transcription factor

Q15406 - NR6A1

Nuclear receptor subfamily 6 group A member 1 (Germ cell nuclear factor) (GCNF) (hGCNF) (Retinoid receptor-related testis-specific receptor) (RTR) (hRTR)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 480 aa

7 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known7
MotifPredictionSourceDNA bindingSupportLogoActions
MA1541.1 Known JASPAR GTCAAGTTCAAGGTCAA Direct PWM Open · Scan
MA1541.2 Known JASPAR CAAGTTCAAGGTCA Direct PWM Open · Scan
M05627_2.00 Known CisBP GTCAAGTTCAAGGTCAA Direct PWM Open · Scan
M05628_2.00 Known CisBP GTCAAGTTCAAGGTCAA Direct PWM Open · Scan
M09284_2.00 Known CisBP AAGTTCAAGGTCA Direct PWM Open · Scan
M11148_2.00 Known CisBP CTCAAGTTCAAGTTCACC Direct PWM Open · Scan
NR6A1_HUMAN.H11MO.0.B Known HOCOMOCO AAGTTCAAGGTCA Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 480 aa
59-140

Region 59-140 0 PWM

Residues
82 aa
Domains
PF00105 · Double treble clef zinc finger, C4 type
3D models
1 active PDB
Templates
5KRB
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 59-1401 model
Actions
Predicted = Low DIMER_Q15406:59:140_5krb_G_1 5krb 59-140 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
59-127PF00105Double treble clef zinc finger, C4 typeoverlaps 59-140
287-453PF00104Ligand-binding domain of nuclear hormone receptorNo overlap with loaded model regions