ModCRE DB

Transcription factor

Q15505 - soxB

SoxB protein

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 76 aa

39 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)13
MotifPredictionSourceDNA bindingSupportLogoActions
M03538_2.00 NN 70+% CisBP AAACAATGACATTGTTT 98.6% identity Open · Scan
M05769_2.00 NN 70+% CisBP CCATTGTGAG 98.6% identity Open · Scan
MA0514.1 NN 70+% JASPAR CCTTTGTTTT 98.6% identity Open · Scan
MA0142.1 NN 70+% JASPAR CTTTGTTATGCAAAT 89.4% identity Open · Scan
MA0143.4 NN 70+% JASPAR AAACAATGGAA 89.4% identity Open · Scan
MA0866.1 NN 70+% JASPAR AACAATGGTAGTGTT 89.4% identity Open · Scan
MA0870.1 NN 70+% JASPAR AACAATAACATTGTT 89.4% identity Open · Scan
MA1562.1 NN 70+% JASPAR CCGAACAATG 88.1% identity Open · Scan
M03979_2.00 NN 70+% CisBP AAACAATAACATTGTTT 88.0% identity Open · Scan
M03983_2.00 NN 70+% CisBP AAACAATTTCAGTGTTT 85.3% identity Open · Scan
M09694_2.00 NN 70+% CisBP AACAATGGAC 81.5% identity Open · Scan
M03508_2.00 NN 70+% CisBP AACAATAACATTGTT 77.0% identity Open · Scan
MA1152.1 NN 70+% JASPAR CTATTGTTTT 77.0% identity Open · Scan
Nearest Neighbor (70% - 40%)26
MotifPredictionSourceDNA bindingSupportLogoActions
MA0084.1 NN 70-40% JASPAR GTAAACAAT 69.3% identity Open · Scan
MA0869.1 NN 70-40% JASPAR AACAATTTCAGTGTT 67.5% identity Open · Scan
M09410_2.00 NN 70-40% CisBP TCCTTTGTTCTC 66.2% identity Open · Scan
MA0867.1 NN 70-40% JASPAR GAACAATTGCAGTGTT 66.2% identity Open · Scan
MA1561.1 NN 70-40% JASPAR ACCGAACAATG 65.7% identity Open · Scan
M03533_2.00 NN 70-40% CisBP AACAATTGCATTGTT 65.0% identity Open · Scan
M02488_2.00 NN 70-40% CisBP CATTGTTTTC 64.3% identity Open · Scan
M09408_2.00 NN 70-40% CisBP TTTTGTTTT 63.0% identity Open · Scan
M03516_2.00 NN 70-40% CisBP AACAATGTTCATTGTT 60.5% identity Open · Scan
MA0078.1 NN 70-40% JASPAR CTCATTGTC 60.5% identity Open · Scan
M00197_2.00 NN 70-40% CisBP AAAACAAT 59.1% identity Open · Scan
M03537_2.00 NN 70-40% CisBP ATGAATTGCAGTCAT 59.1% identity Open · Scan
MA0077.1 NN 70-40% JASPAR CCATTGTTC 59.1% identity Open · Scan
MA0442.1 NN 70-40% JASPAR CTTTGT 59.1% identity Open · Scan
MA0868.1 NN 70-40% JASPAR AACAATGTGCAGTGTT 59.1% identity Open · Scan
M00204_2.00 NN 70-40% CisBP AAAACAAT 57.7% identity Open · Scan
MA1563.1 NN 70-40% JASPAR CACAATGC 57.7% identity Open · Scan
M00212_2.00 NN 70-40% CisBP GAACAATA 55.0% identity Open · Scan
M03981_2.00 NN 70-40% CisBP ATTGTTCGGTGGT 55.0% identity Open · Scan
MA1120.1 NN 70-40% JASPAR AAACAATGGCA 55.0% identity Open · Scan
M03974_2.00 NN 70-40% CisBP AACAATAACATTGTT 53.9% identity Open · Scan
M09404_2.00 NN 70-40% CisBP TAACAATA 52.6% identity Open · Scan
M11309_2.00 NN 70-40% CisBP TTAACAATAC 52.6% identity Open · Scan
MA0087.1 NN 70-40% JASPAR ATTGTTA 52.6% identity Open · Scan
M05892_2.00 NN 70-40% CisBP AAACAATAGA 52.1% identity Open · Scan
MA0515.1 NN 70-40% JASPAR CCATTGTTTT 52.1% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 76 aa
1-67

Region 1-67 0 PWM

Residues
67 aa
Domains
PF00505 · HMG (high mobility group) box
3D models
1 active PDB
Templates
1HRY
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 1-671 model
Actions
Predicted = Low TFS_Q15505:1:67_1hry_A_1 1hry 1-67 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
1-65PF00505HMG (high mobility group) boxoverlaps 1-67