ModCRE DB

Transcription factor

Q15572 - TAF1C

TATA box-binding protein-associated factor RNA polymerase I subunit C (RNA polymerase I-specific TBP-associated factor 110 kDa) (TAFI110) (TATA box-binding protein-associated factor 1C) (TBP-associated factor 1C) (Transcription initiation factor SL1/TIF-IB subunit C)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 869 aa

5 Generated PWM 5 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE5
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_sp_Q15572_TAF1C_HUMAN:300:380_4e54_B_1 ModCRE Homology model ATGTTTGAGC Region 300-380 · 1 3D model Open · Scan
TFS_sp_Q15572_TAF1C_HUMAN:300:380_6r8y_L_1 ModCRE Homology model ACATT Region 300-380 · 1 3D model Open · Scan
TFS_sp_Q15572_TAF1C_HUMAN:300:380_6r90_L_1 ModCRE Homology model TTTTTCCATACTTTCTGCTGAAAGCGTAGGAAAAAATAACCAAACGATTGAGAACCACACGCAAAGAATCCTAAGTTTTTCCC Region 300-380 · 1 3D model Open · Scan
TFS_sp_Q15572_TAF1C_HUMAN:300:380_6r91_L_1 ModCRE Homology model ACATTCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTTGAACGA Region 300-380 · 1 3D model Open · Scan
TFS_sp_Q15572_TAF1C_HUMAN:300:380_6r92_L_1 ModCRE Homology model ACGGCGCGGGGCCAAGGAGTTGATGGACGGTGGCCGGATACAAAGTCTAATGAGGTACATGTTATTCTAAGCGGGGCCGG Region 300-380 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 869 aa
300-380

Region 300-380 5 PWM

Residues
81 aa
Domains
PF20641 · TAF1C, beta-propeller
3D models
5 active PDBs
Templates
4E54, 6R8Y, 6R90, 6R91, 6R92
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
5 active PDB models
Region 300-3805 models
Actions
Predicted = Low TFS_sp_Q15572_TAF1C_HUMAN:300:380_4e54_B_1 4e54 300-380 View model · PDB
Predicted = Low TFS_sp_Q15572_TAF1C_HUMAN:300:380_6r8y_L_1 6r8y 300-380 View model · PDB
Predicted = Low TFS_sp_Q15572_TAF1C_HUMAN:300:380_6r90_L_1 6r90 300-380 View model · PDB
Predicted = Low TFS_sp_Q15572_TAF1C_HUMAN:300:380_6r91_L_1 6r91 300-380 View model · PDB
Predicted = Low TFS_sp_Q15572_TAF1C_HUMAN:300:380_6r92_L_1 6r92 300-380 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
309-445PF20641TAF1C, beta-propelleroverlaps 300-380
555-764PF20642TAF1C, helical bundle domainNo overlap with loaded model regions
789-869PF20643TAF1C, C-terminal domainNo overlap with loaded model regions